» Articles » PMID: 15245590

Comparative Genomic Hybridization (CGH)-arrays Pave the Way for Identification of Novel Cancer-related Genes

Overview
Journal Cancer Sci
Specialty Oncology
Date 2004 Jul 13
PMID 15245590
Citations 41
Authors
Affiliations
Soon will be listed here.
Abstract

Comparative genomic hybridization (CGH) has already made a significant impact on cancer cytogenetics. However, CGH to metaphase chromosomes can provide only limited resolution at the 5-10 Mb level. To circumvent this limitation, array-based CGH has been devised. Since spotted DNAs in a CGH-array contain sequence information directly connected with the genome database, we can easily note particular biological aspects of genes that lie within regions involved in copy-number aberrations. High-density, sub-megabase arrays can reveal nonrandom chromosome copy-number aberrations responsible for neoplastic transformation that have been masked under complex karyotypes in epithelial solid tumors. High-density CGH-array therefore paves the way for identification of disease-related genetic aberrations that have not yet been detected by existing technologies, and array-based CGH technology should soon be practical for diagnosis of cancer or genetic diseases in the clinical setting.

Citing Articles

Exploring the Therapeutic Potential of BRCA1 and BRCA2 as Targets in Canine Oncology: A Comprehensive Review of Their Role in Cancer Development and Treatment.

Pasaol J, Smieszek A, Pawlak A Int J Mol Sci. 2025; 26(4).

PMID: 40004231 PMC: 11855874. DOI: 10.3390/ijms26041768.


Identification of PDHX as a metabolic target for esophageal squamous cell carcinoma.

Inoue J, Kishikawa M, Tsuda H, Nakajima Y, Asakage T, Inazawa J Cancer Sci. 2021; 112(7):2792-2802.

PMID: 33964039 PMC: 8253269. DOI: 10.1111/cas.14938.


Array comparative genomic hybridization analysis discloses chromosome copy number alterations as indicators of patient outcome in lymph node-negative breast cancer.

Kikuchi-Koike R, Nagasaka K, Tsuda H, Ishii Y, Sakamoto M, Kikuchi Y BMC Cancer. 2019; 19(1):521.

PMID: 31146704 PMC: 6543587. DOI: 10.1186/s12885-019-5737-7.


: A Customized aCGH for the Analysis of Copy Number Variations in Neurological Disorders.

La Cognata V, Morello G, Gentile G, Cavalcanti F, Cittadella R, Conforti F Curr Genomics. 2018; 19(6):431-443.

PMID: 30258275 PMC: 6128384. DOI: 10.2174/1389202919666180404105451.


Nanotechnology-Based Strategies for Early Cancer Diagnosis Using Circulating Tumor Cells as a Liquid Biopsy.

Huang Q, Wang Y, Chen X, Wang Y, Li Z, Du S Nanotheranostics. 2018; 2(1):21-41.

PMID: 29291161 PMC: 5743836. DOI: 10.7150/ntno.22091.


References
1.
Massion P, Kuo W, Stokoe D, Olshen A, Treseler P, Chin K . Genomic copy number analysis of non-small cell lung cancer using array comparative genomic hybridization: implications of the phosphatidylinositol 3-kinase pathway. Cancer Res. 2002; 62(13):3636-40. View

2.
Bignell G, Huang J, Greshock J, Watt S, Butler A, West S . High-resolution analysis of DNA copy number using oligonucleotide microarrays. Genome Res. 2004; 14(2):287-95. PMC: 327104. DOI: 10.1101/gr.2012304. View

3.
Albertson D, Pinkel D . Genomic microarrays in human genetic disease and cancer. Hum Mol Genet. 2003; 12 Spec No 2:R145-52. DOI: 10.1093/hmg/ddg261. View

4.
Lampel S, Stilgenbauer S, Nickolenko J, Benner A, Dohner H, Cremer T . Matrix-based comparative genomic hybridization: biochips to screen for genomic imbalances. Genes Chromosomes Cancer. 1997; 20(4):399-407. View

5.
Saito-Ohara F, Imoto I, Inoue J, Hosoi H, Nakagawara A, Sugimoto T . PPM1D is a potential target for 17q gain in neuroblastoma. Cancer Res. 2003; 63(8):1876-83. View