Guanzon D, Pienkoss S, Brandenburg V, Roder J, Scheller D, Dietze A
Nucleic Acids Res. 2025; 53(3).
PMID: 39907110
PMC: 11795201.
DOI: 10.1093/nar/gkaf041.
Groon L, Bruns S, Dlugosch L, Wilkes H, Wienhausen G
Appl Environ Microbiol. 2025; 91(2):e0142224.
PMID: 39840980
PMC: 11837498.
DOI: 10.1128/aem.01422-24.
Fuqua T, Sun Y, Wagner A
Elife. 2024; 13.
PMID: 39704646
PMC: 11661796.
DOI: 10.7554/eLife.98654.
Raymond W, DeRoo J, Munsky B
bioRxiv. 2024; .
PMID: 39677788
PMC: 11642740.
DOI: 10.1101/2023.11.23.568398.
Felder S, Nelson I, Hatfield B, Weeks K
RNA. 2024; 31(2):143-149.
PMID: 39662963
PMC: 11789479.
DOI: 10.1261/rna.080136.124.
Ligand response of guanidine-IV riboswitch at single-molecule level.
Gao L, Chen D, Liu Y
Elife. 2024; 13.
PMID: 39620905
PMC: 11611296.
DOI: 10.7554/eLife.94706.
Strategy for Optimizing Vitamin B12 Production in KT2440 Using Metabolic Modeling.
Prieto-de Lima T, Rojas-Jimenez K, Vaglio C
Metabolites. 2024; 14(11).
PMID: 39590872
PMC: 11596459.
DOI: 10.3390/metabo14110636.
Origin of ribonucleotide recognition motifs through ligand mimicry at early earth.
Mozumdar D, Roy R
RNA Biol. 2024; 21(1):107-121.
PMID: 39526332
PMC: 11556283.
DOI: 10.1080/15476286.2024.2423149.
NusG-dependent RNA polymerase pausing is a common feature of riboswitch regulatory mechanisms.
Jayasinghe O, Ritchey L, Breil T, Newman P, Yakhnin H, Babitzke P
Nucleic Acids Res. 2024; 52(21):12945-12960.
PMID: 39494516
PMC: 11602163.
DOI: 10.1093/nar/gkae981.
Opportunities for Riboswitch Inhibition by Targeting Co-Transcriptional RNA Folding Events.
Stephen C, Palmer D, Mishanina T
Int J Mol Sci. 2024; 25(19).
PMID: 39408823
PMC: 11476745.
DOI: 10.3390/ijms251910495.
Machine learning-augmented molecular dynamics simulations (MD) reveal insights into the disconnect between affinity and activation of ZTP riboswitch ligands.
Fullenkamp C, Mehdi S, Jones C, Tenney L, Pichling P, Prestwood P
bioRxiv. 2024; .
PMID: 39314358
PMC: 11419147.
DOI: 10.1101/2024.09.13.612887.
A Computational Approach for Designing Synthetic Riboswitches for Next-Generation RNA Therapeutics.
Mukherjee S, Mukherjee S, Barash D
Methods Mol Biol. 2024; 2847:193-204.
PMID: 39312145
DOI: 10.1007/978-1-0716-4079-1_13.
Thermodynamic compensation to temperature extremes in B. subtilis vs T. maritima lysine riboswitches.
Marton Menendez A, Nesbitt D
Biophys J. 2024; 123(19):3331-3345.
PMID: 39091026
PMC: 11480769.
DOI: 10.1016/j.bpj.2024.07.039.
START: A Versatile Platform for Bacterial Ligand Sensing with Programmable Performances.
Kim J, Seo M, Lim Y, Kim J
Adv Sci (Weinh). 2024; 11(36):e2402029.
PMID: 39075726
PMC: 11423158.
DOI: 10.1002/advs.202402029.
Temperature-sensing riboceptors.
Anbalagan S
RNA Biol. 2024; 21(1):1-6.
PMID: 39016038
PMC: 11259075.
DOI: 10.1080/15476286.2024.2379118.
Controlling the expression of heterologous genes in Bdellovibrio bacteriovorus using synthetic biology strategies.
Salgado S, Hernandez-Herreros N, Prieto M
Microb Biotechnol. 2024; 17(6):e14517.
PMID: 38934530
PMC: 11209729.
DOI: 10.1111/1751-7915.14517.
gRNAde: Geometric Deep Learning for 3D RNA inverse design.
Joshi C, Jamasb A, Vinas R, Harris C, Mathis S, Mathis S
bioRxiv. 2024; .
PMID: 38826198
PMC: 11142113.
DOI: 10.1101/2024.03.31.587283.
Emerging roles of long non-coding RNAs in human epilepsy.
Yazarlou F, Lipovich L, Loeb J
Epilepsia. 2024; 65(6):1491-1511.
PMID: 38687769
PMC: 11166529.
DOI: 10.1111/epi.17937.
Adenine Methylation Enhances the Conformational Flexibility of an RNA Hairpin Tetraloop.
Levintov L, Vashisth H
J Phys Chem B. 2024; 128(13):3157-3166.
PMID: 38535997
PMC: 11000223.
DOI: 10.1021/acs.jpcb.4c00522.
Strain Engineering Using a Theophylline Responsive RiboCas for Controlled Gene Expression.
Lau M, Madika A, Zhang Y, Minton N
ACS Synth Biol. 2024; 13(4):1237-1245.
PMID: 38517011
PMC: 11036489.
DOI: 10.1021/acssynbio.3c00735.
