» Articles » PMID: 15173578

Polyadenylation of RRNA in Saccharomyces Cerevisiae

Overview
Specialty Science
Date 2004 Jun 3
PMID 15173578
Citations 90
Authors
Affiliations
Soon will be listed here.
Abstract

In contrast to mRNAs, rRNAs are transcribed by RNA polymerase I or III and are not believed to be polyadenylated. Here we show that in Saccharomyces cerevisiae, at least a small fraction of rRNAs do have a poly(A) tail. The levels of polyadenylated rRNAs are dramatically increased in strains lacking the degradation function of Rrp6p, a component of the nuclear exosome. Pap1p, the poly(A) polymerase, is responsible for adenylating the rRNAs despite the fact that the rRNAs do not have a canonical polyadenylation signal. Polyadenylated rRNAs reside mainly within the nucleus and are in turn degraded. For at least one rRNA type, the polyadenylation preferentially occurs on the precursor rather than the mature product. The existence of polyadenylated rRNAs may reflect a quality-control mechanism of rRNA biogenesis.

Citing Articles

Adaptable and comprehensive approaches for long-read nanopore sequencing of polyadenylated and non-polyadenylated RNAs.

Haile S, Corbett R, ONeill K, Xu J, Smailus D, Pandoh P Front Genet. 2024; 15:1466338.

PMID: 39687742 PMC: 11647301. DOI: 10.3389/fgene.2024.1466338.


Progressive transcriptomic shifts in evolved yeast strains following gene knockout.

Jiang B, Xiao C, Liu L iScience. 2024; 27(11):111219.

PMID: 39559754 PMC: 11570485. DOI: 10.1016/j.isci.2024.111219.


High resolution landscape of ribosomal RNA processing and surveillance.

An W, Yan Y, Ye K Nucleic Acids Res. 2024; 52(17):10630-10644.

PMID: 38994562 PMC: 11417381. DOI: 10.1093/nar/gkae606.


Polyadenylated versions of small non-coding RNAs in are degraded by Rrp6p/Rrp47p independent of the core nuclear exosome.

Chaudhuri A, Paul S, Banerjea M, Das B Microb Cell. 2024; 11:155-186.

PMID: 38783922 PMC: 11115967. DOI: 10.15698/mic2024.05.823.


Profiling the polyadenylated transcriptome of extracellular vesicles with long-read nanopore sequencing.

Padilla J, Barutcu S, Malet L, Deschamps-Francoeur G, Calderon V, Kwon E BMC Genomics. 2023; 24(1):564.

PMID: 37736705 PMC: 10514964. DOI: 10.1186/s12864-023-09552-6.


References
1.
Van Hoof A, Lennertz P, Parker R . Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs. Mol Cell Biol. 1999; 20(2):441-52. PMC: 85098. DOI: 10.1128/MCB.20.2.441-452.2000. View

2.
Hirose Y, Manley J . RNA polymerase II is an essential mRNA polyadenylation factor. Nature. 1998; 395(6697):93-6. DOI: 10.1038/25786. View

3.
Fleischmann J, Liu H . Polyadenylation of ribosomal RNA by Candida albicans. Gene. 2001; 265(1-2):71-6. DOI: 10.1016/s0378-1119(01)00362-6. View

4.
Butler J . The yin and yang of the exosome. Trends Cell Biol. 2002; 12(2):90-6. DOI: 10.1016/s0962-8924(01)02225-5. View

5.
Li Z, Reimers S, Pandit S, Deutscher M . RNA quality control: degradation of defective transfer RNA. EMBO J. 2002; 21(5):1132-8. PMC: 125898. DOI: 10.1093/emboj/21.5.1132. View