» Articles » PMID: 15039557

Determination of a Novel Structure by a Combination of Long-wavelength Sulfur Phasing and Radiation-damage-induced Phasing

Overview
Specialty Chemistry
Date 2004 Mar 25
PMID 15039557
Citations 10
Authors
Affiliations
Soon will be listed here.
Abstract

The structure of the 115 amino-acid residue protein DsvC was determined based on the anomalous scattering provided by the five S atoms present in the structure. By collecting the diffraction data at a wavelength of 1.9 A, the anomalous signal provided by the S atoms was enhanced. However, significant radiation damage occurred during the course of the experiment, which led to differences between different parts of the data set. Only by dividing the total data set into five data sets was it possible to obtain phases; these could then be successfully extended to allow structure determination by the automated model-building program ARP/wARP. A computational correction for the radiation damage was found to significantly improve the success rate in determining the heavy-atom substructure and to improve phasing and refinement statistics.

Citing Articles

Structural study to analyze the DNA-binding properties of DsrC protein from the dsr operon of sulfur-oxidizing bacterium Allochromatium vinosum.

Ghosh S, Bagchi A J Mol Model. 2019; 25(3):74.

PMID: 30798412 DOI: 10.1007/s00894-019-3945-3.


X-ray and UV radiation-damage-induced phasing using synchrotron serial crystallography.

Foos N, Seuring C, Schubert R, Burkhardt A, Svensson O, Meents A Acta Crystallogr D Struct Biol. 2018; 74(Pt 4):366-378.

PMID: 29652263 PMC: 5892880. DOI: 10.1107/S2059798318001535.


Data collection with a tailored X-ray beam size at 2.69 Å wavelength (4.6 keV): sulfur SAD phasing of Cdc23(Nterm).

Cianci M, Groves M, Barford D, Schneider T Acta Crystallogr D Struct Biol. 2016; 72(Pt 3):403-12.

PMID: 26960127 PMC: 4784671. DOI: 10.1107/S2059798315010268.


Radiation-damage-induced phasing: a case study using UV irradiation with light-emitting diodes.

de Sanctis D, Zubieta C, Felisaz F, Caserotto H, Nanao M Acta Crystallogr D Struct Biol. 2016; 72(Pt 3):395-402.

PMID: 26960126 PMC: 4784670. DOI: 10.1107/S2059798315021658.


Use of europium ions for SAD phasing of lysozyme at the Cu Kα wavelength.

Vijayakumar B, Velmurugan D Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013; 69(Pt 1):20-4.

PMID: 23295480 PMC: 3539697. DOI: 10.1107/S1744309112047562.