» Articles » PMID: 15020463

Identification of Edc3p As an Enhancer of MRNA Decapping in Saccharomyces Cerevisiae

Overview
Journal Genetics
Specialty Genetics
Date 2004 Mar 17
PMID 15020463
Citations 89
Authors
Affiliations
Soon will be listed here.
Abstract

The major pathway of mRNA decay in yeast initiates with deadenylation, followed by mRNA decapping and 5'-3' exonuclease digestion. An in silico approach was used to identify new proteins involved in the mRNA decay pathway. One such protein, Edc3p, was identified as a conserved protein of unknown function having extensive two-hybrid interactions with several proteins involved in mRNA decapping and 5'-3' degradation including Dcp1p, Dcp2p, Dhh1p, Lsm1p, and the 5'-3' exonuclease, Xrn1p. We show that Edc3p can stimulate mRNA decapping of both unstable and stable mRNAs in yeast when the decapping enzyme is compromised by temperature-sensitive alleles of either the DCP1 or the DCP2 genes. In these cases, deletion of EDC3 caused a synergistic mRNA-decapping defect at the permissive temperatures. The edc3Delta had no effect when combined with the lsm1Delta, dhh1Delta, or pat1Delta mutations, which appear to affect an early step in the decapping pathway. This suggests that Edc3p specifically affects the function of the decapping enzyme per se. Consistent with a functional role in decapping, GFP-tagged Edc3p localizes to cytoplasmic foci involved in mRNA decapping referred to as P-bodies. These results identify Edc3p as a new protein involved in the decapping reaction.

Citing Articles

UBAP2L contributes to formation of P-bodies and modulates their association with stress granules.

Riggs C, Kedersha N, Amarsanaa M, Zubair S, Ivanov P, Anderson P J Cell Biol. 2024; 223(10).

PMID: 39007803 PMC: 11248227. DOI: 10.1083/jcb.202307146.


Specifically Targeting Metacaspases of : A New Therapeutic Opportunity.

Bienvenu A, Ballut L, Picot S J Fungi (Basel). 2024; 10(2).

PMID: 38392762 PMC: 10889698. DOI: 10.3390/jof10020090.


Two RNA binding proteins, ADAD2 and RNF17, interact to form a heterogeneous population of novel meiotic germ cell granules with developmentally dependent organelle association.

Chukrallah L, Potgieter S, Chueh L, Snyder E PLoS Genet. 2023; 19(7):e1010519.

PMID: 37428816 PMC: 10359003. DOI: 10.1371/journal.pgen.1010519.


Eukaryotic mRNA decapping factors: molecular mechanisms and activity.

He F, Jacobson A FEBS J. 2022; 290(21):5057-5085.

PMID: 36098474 PMC: 10008757. DOI: 10.1111/febs.16626.


A distinct P-body-like granule is induced in response to the disruption of microtubule integrity in Saccharomyces cerevisiae.

Hurst Z, Liu W, Shi Q, Herman P Genetics. 2022; 222(1).

PMID: 35876801 PMC: 9434292. DOI: 10.1093/genetics/iyac105.


References
1.
Bonnerot C, Boeck R, Lapeyre B . The two proteins Pat1p (Mrt1p) and Spb8p interact in vivo, are required for mRNA decay, and are functionally linked to Pab1p. Mol Cell Biol. 2000; 20(16):5939-46. PMC: 86071. DOI: 10.1128/MCB.20.16.5939-5946.2000. View

2.
Zuk D, Belk J, Jacobson A . Temperature-sensitive mutations in the Saccharomyces cerevisiae MRT4, GRC5, SLA2 and THS1 genes result in defects in mRNA turnover. Genetics. 1999; 153(1):35-47. PMC: 1460724. DOI: 10.1093/genetics/153.1.35. View

3.
Van Hoof A, Staples R, Baker R, Parker R . Function of the ski4p (Csl4p) and Ski7p proteins in 3'-to-5' degradation of mRNA. Mol Cell Biol. 2000; 20(21):8230-43. PMC: 86432. DOI: 10.1128/MCB.20.21.8230-8243.2000. View

4.
Schwikowski B, Uetz P, Fields S . A network of protein-protein interactions in yeast. Nat Biotechnol. 2000; 18(12):1257-61. DOI: 10.1038/82360. View

5.
Tucker M, Staples R, Chen J, Denis C, Parker R . The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae. Cell. 2001; 104(3):377-86. DOI: 10.1016/s0092-8674(01)00225-2. View