DnaSP, DNA Polymorphism Analyses by the Coalescent and Other Methods

Overview

Journal Bioinformatics

Publisher Oxford University Press

Specialty Biology

Date 2003 Dec 12

PMID 14668244

Citations 1835

Authors

Julio Rozas

Juan C Sanchez-DelBarrio

Xavier Messeguer

Ricardo Rozas

Affiliations

Soon will be listed here.

Abstract

Summary: DnaSP is a software package for the analysis of DNA polymorphism data. Present version introduces several new modules and features which, among other options allow: (1) handling big data sets (approximately 5 Mb per sequence); (2) conducting a large number of coalescent-based tests by Monte Carlo computer simulations; (3) extensive analyses of the genetic differentiation and gene flow among populations; (4) analysing the evolutionary pattern of preferred and unpreferred codons; (5) generating graphical outputs for an easy visualization of results.

Availability: The software package, including complete documentation and examples, is freely available to academic users from: http://www.ub.es/dnasp

Citing Articles

Virulence and Genetic Diversity of spp., Causal Agents of Rust on Switchgrass ( L.) in the USA.

Bahri B, Tian P, Rijal S, Devos K, Bennetzen J, Smith S Pathogens. 2025; 14(2).

PMID: 40005569 PMC: 11858125. DOI: 10.3390/pathogens14020194.

The population chloroplast genomes of Populus reveal the phylogenetic relationship between three new taxa of sect. Leucoides and their parents.

Shi Y, Huang J, Wan X, Shi J, Chen Z, Zeng W BMC Genomics. 2025; 26(1):156.

PMID: 39962394 PMC: 11834202. DOI: 10.1186/s12864-024-11099-z.

Prevalence of Heritable Symbionts in Parisian Bedbugs (Hemiptera: Cimicidae).

Cagatay N, Akhoundi M, Izri A, Brun S, Hurst G Environ Microbiol Rep. 2025; 17(1):e70054.

PMID: 39887637 PMC: 11779572. DOI: 10.1111/1758-2229.70054.

Assembly and comparative analysis of the complete mitogenome of var. , an exceptional berry plant possessing sweet leaves.

Shi Y, Chen Z, Jiang J, Wu W, Xin Y, Zeng W Front Plant Sci. 2025; 15:1504687.

PMID: 39764230 PMC: 11701164. DOI: 10.3389/fpls.2024.1504687.

Differences between mates at the TLR1Lb locus are associated with lower reproductive success in a long-lived seabird.

Gousy-Leblanc M, Merkling T, Colston-Nepali L, Lachance Linklater E, Elliott K, Friesen V Sci Rep. 2024; 14(1):31608.

PMID: 39738121 PMC: 11686313. DOI: 10.1038/s41598-024-77750-7.