Schmidt D, Wohlers A, Kuhnert N
Molecules. 2025; 30(4).
PMID: 40005276
PMC: 11858516.
DOI: 10.3390/molecules30040965.
Sternke M, Tripp K, Barrick D
bioRxiv. 2025; .
PMID: 39868188
PMC: 11760396.
DOI: 10.1101/2025.01.09.632118.
Coquille S, Pereira C, Roche J, Santoni G, Engilberge S, Brochier-Armanet C
Mol Biol Evol. 2025; 42(1).
PMID: 39834309
PMC: 11747225.
DOI: 10.1093/molbev/msae265.
Klapper M, Stallforth P
Microlife. 2024; 5:uqae023.
PMID: 39660047
PMC: 11630838.
DOI: 10.1093/femsml/uqae023.
Evensen K, Rusin E, Robinson W, Price C, Kelly S, Lamb D
Sci Rep. 2024; 14(1):23890.
PMID: 39396059
PMC: 11470919.
DOI: 10.1038/s41598-024-74212-y.
Lack of membrane sex steroid receptors for mediating rapid endocrine responses in molluscan nervous systems.
Fodor I, Matsubara S, Osugi T, Shiraishi A, Kawada T, Satake H
Front Endocrinol (Lausanne). 2024; 15:1458422.
PMID: 39188914
PMC: 11345136.
DOI: 10.3389/fendo.2024.1458422.
Nuclear Receptors and the Hidden Language of the Metabolome.
Chen Y, Anderson M, Payne N, Santori F, Ivanova N
Cells. 2024; 13(15.
PMID: 39120315
PMC: 11311682.
DOI: 10.3390/cells13151284.
Evidence that the cold- and menthol-sensing functions of the human TRPM8 channel evolved separately.
Luu D, Ramesh N, Kazan I, Shah K, Lahiri G, Mana M
Sci Adv. 2024; 10(25):eadm9228.
PMID: 38905339
PMC: 11192081.
DOI: 10.1126/sciadv.adm9228.
The importance of input sequence set to consensus-derived proteins and their relationship to reconstructed ancestral proteins.
Nixon C, Lim S, Sternke M, Barrick D, Harms M, Marqusee S
Protein Sci. 2024; 33(6):e5011.
PMID: 38747388
PMC: 11094778.
DOI: 10.1002/pro.5011.
Extant Sequence Reconstruction: The Accuracy of Ancestral Sequence Reconstructions Evaluated by Extant Sequence Cross-Validation.
Sennett M, Theobald D
J Mol Evol. 2024; 92(2):181-206.
PMID: 38502220
PMC: 10978691.
DOI: 10.1007/s00239-024-10162-3.
Perspectives on Computational Enzyme Modeling: From Mechanisms to Design and Drug Development.
Nam K, Shao Y, Major D, Wolf-Watz M
ACS Omega. 2024; 9(7):7393-7412.
PMID: 38405524
PMC: 10883025.
DOI: 10.1021/acsomega.3c09084.
Evolution towards simplicity in bacterial small heat shock protein system.
Karas P, Kochanowicz K, Pitek M, Domanski P, Obuchowski I, Tomiczek B
Elife. 2023; 12.
PMID: 38063373
PMC: 10708888.
DOI: 10.7554/eLife.89813.
Sex differences in energy metabolism: natural selection, mechanisms and consequences.
Mauvais-Jarvis F
Nat Rev Nephrol. 2023; 20(1):56-69.
PMID: 37923858
DOI: 10.1038/s41581-023-00781-2.
Estrogen Receptor Signaling in Breast Cancer.
Miziak P, Baran M, Blaszczak E, Przybyszewska-Podstawka A, Kalafut J, Smok-Kalwat J
Cancers (Basel). 2023; 15(19).
PMID: 37835383
PMC: 10572081.
DOI: 10.3390/cancers15194689.
Asymmetric dimerization in a transcription factor superfamily is promoted by allosteric interactions with DNA.
Patel A, Vilela P, Shaik T, McEwen A, Hazemann I, Brillet K
Nucleic Acids Res. 2023; 51(16):8864-8879.
PMID: 37503845
PMC: 10484738.
DOI: 10.1093/nar/gkad632.
Domain acquisition by class I aminoacyl-tRNA synthetase urzymes coordinated the catalytic functions of HVGH and KMSKS motifs.
Tang G, Elder J, Douglas J, Carter C
Nucleic Acids Res. 2023; 51(15):8070-8084.
PMID: 37470821
PMC: 10450160.
DOI: 10.1093/nar/gkad590.
Next-generation development and application of codon model in evolution.
Gupta M, Vadde R
Front Genet. 2023; 14:1091575.
PMID: 36777719
PMC: 9911445.
DOI: 10.3389/fgene.2023.1091575.
Simple mechanisms for the evolution of protein complexity.
Pillai A, Hochberg G, Thornton J
Protein Sci. 2022; 31(11):e4449.
PMID: 36107026
PMC: 9601886.
DOI: 10.1002/pro.4449.
Methodologies for Microbial Ancestral Sequence Reconstruction.
Arenas M
Methods Mol Biol. 2022; 2569:283-303.
PMID: 36083454
DOI: 10.1007/978-1-0716-2691-7_14.
An Integrated Method to Reconstruct Ancient Proteins.
Garcia A, Fer E, Sephus C, Kacar B
Methods Mol Biol. 2022; 2569:267-281.
PMID: 36083453
DOI: 10.1007/978-1-0716-2691-7_13.