» Articles » PMID: 1370343

Atomic Structure of Single-stranded DNA Bacteriophage Phi X174 and Its Functional Implications

Overview
Journal Nature
Specialty Science
Date 1992 Jan 9
PMID 1370343
Citations 89
Authors
Affiliations
Soon will be listed here.
Abstract

The mechanism of DNA ejection, viral assembly and evolution are related to the structure of bacteriophage phi X174. The F protein forms a T = 1 capsid whose major folding motif is the eight-stranded antiparallel beta barrel found in many other icosahedral viruses. Groups of 5 G proteins form 12 dominating spikes that enclose a hydrophilic channel containing some diffuse electron density. Each G protein is a tight beta barrel with its strands running radially outwards and with a topology similar to that of the F protein. The 12 'pilot' H proteins per virion may be partially located in the putative ion channel. The small, basic J protein is associated with the DNA and is situated in an interior cleft of the F protein. Tentatively, there are three regions of partially ordered DNA structure,

Citing Articles

A stargate mechanism of genome delivery unveiled by cryogenic electron tomography.

Bardy P, MacDonald C, Kirchberger P, Jenkins H, Botka T, Byrom L bioRxiv. 2024; .

PMID: 38915634 PMC: 11195240. DOI: 10.1101/2024.06.11.598214.


Computational studies on rep and capsid proteins of CRESS DNA viruses.

Yadhav Y, Selvaraj K, Ramasamy S, Venkataraman S Virusdisease. 2024; 35(1):17-26.

PMID: 38817400 PMC: 11133267. DOI: 10.1007/s13337-024-00858-x.


Disenfranchised DNA: biochemical analysis of mutant øX174 DNA-binding proteins may further elucidate the evolutionary significance of the unessential packaging protein A.

Love S, Posey S, Burch A, Fane B J Virol. 2024; 98(3):e0182723.

PMID: 38305183 PMC: 10949513. DOI: 10.1128/jvi.01827-23.


Stepwise Evolution of E. coli C and ΦX174 Reveals Unexpected Lipopolysaccharide (LPS) Diversity.

Romeyer Dherbey J, Parab L, Gallie J, Bertels F Mol Biol Evol. 2023; 40(7).

PMID: 37399035 PMC: 10368449. DOI: 10.1093/molbev/msad154.


Reekeekee- and roodoodooviruses, two different clades constituted by the smallest DNA phages.

Olo Ndela E, Roux S, Henke C, Sczyrba A, Sime Ngando T, Varsani A Virus Evol. 2023; 9(1):veac123.

PMID: 36694818 PMC: 9865509. DOI: 10.1093/ve/veac123.


References
1.
Burgess A . Studies on the proteins of phi X174. II. The protein composition of the phi X coat. Proc Natl Acad Sci U S A. 1969; 64(2):613-7. PMC: 223388. DOI: 10.1073/pnas.64.2.613. View

2.
Argos P, ROSSMAN M, Grau U, Zuber H, FRANK G, Tratschin J . Thermal stability and protein structure. Biochemistry. 1979; 18(25):5698-703. DOI: 10.1021/bi00592a028. View

3.
Yazaki K . Electron microscopic studies of bacteriophage phi X174 intact and "eclipsing' particles, and the genome by the staining, and shadowing method. J Virol Methods. 1981; 2(3):159-67. DOI: 10.1016/0166-0934(81)90034-3. View

4.
Aoyama A, Hamatake R, Hayashi M . Morphogenesis of phi X174: in vitro synthesis of infectious phage from purified viral components. Proc Natl Acad Sci U S A. 1981; 78(12):7285-9. PMC: 349250. DOI: 10.1073/pnas.78.12.7285. View

5.
Rossmann M . The molecular replacement method. Acta Crystallogr A. 1990; 46 ( Pt 2):73-82. DOI: 10.1107/s0108767389009815. View