Kratka K, Sistik P, Olivkova I, Kusnierova P, Svagera Z, Stejskal D
J Mass Spectrom. 2025; 60(3):e5116.
PMID: 39967472
PMC: 11836596.
DOI: 10.1002/jms.5116.
Yan S, Bhawal R, Yin Z, Thannhauser T, Zhang S
Mol Hortic. 2023; 2(1):17.
PMID: 37789425
PMC: 10514990.
DOI: 10.1186/s43897-022-00038-9.
Alvarez-Urdiola R, Borras E, Valverde F, Matus J, Sabido E, Riechmann J
Methods Mol Biol. 2023; 2686:509-536.
PMID: 37540375
DOI: 10.1007/978-1-0716-3299-4_24.
Alvarez-Urdiola R, Matus J, Riechmann J
Methods Mol Biol. 2023; 2686:495-508.
PMID: 37540374
DOI: 10.1007/978-1-0716-3299-4_23.
Christopher J, Stadler C, Martin C, Morgenstern M, Pan Y, Betsinger C
Nat Rev Methods Primers. 2021; 1.
PMID: 34549195
PMC: 8451152.
DOI: 10.1038/s43586-021-00029-y.
Harnessing microbial wealth for lignocellulose biomass valorization through secretomics: a review.
Sethupathy S, Murillo Morales G, Li Y, Wang Y, Jiang J, Sun J
Biotechnol Biofuels. 2021; 14(1):154.
PMID: 34225772
PMC: 8256616.
DOI: 10.1186/s13068-021-02006-9.
Methodology and validation of a new tandem mass spectrometer method for the quantification of inorganic and organic 18O-phosphate species.
Schryer A, Bradshaw K, Siciliano S
PLoS One. 2020; 15(2):e0229172.
PMID: 32092104
PMC: 7039501.
DOI: 10.1371/journal.pone.0229172.
MCtandem: an efficient tool for large-scale peptide identification on many integrated core (MIC) architecture.
Li C, Li K, Li K, Lin F
BMC Bioinformatics. 2019; 20(1):397.
PMID: 31315562
PMC: 6637555.
DOI: 10.1186/s12859-019-2980-5.
LZTR1 is a regulator of RAS ubiquitination and signaling.
Bigenzahn J, Collu G, Kartnig F, Pieraks M, Vladimer G, Heinz L
Science. 2018; 362(6419):1171-1177.
PMID: 30442766
PMC: 6794158.
DOI: 10.1126/science.aap8210.
Target-Decoy-Based False Discovery Rate Estimation for Large-Scale Metabolite Identification.
Wang X, Jones D, Shaw T, Cho J, Wang Y, Tan H
J Proteome Res. 2018; 17(7):2328-2334.
PMID: 29790753
PMC: 6252074.
DOI: 10.1021/acs.jproteome.8b00019.
Characterization of host proteins interacting with the lymphocytic choriomeningitis virus L protein.
Khamina K, Lercher A, Caldera M, Schliehe C, Vilagos B, Sahin M
PLoS Pathog. 2017; 13(12):e1006758.
PMID: 29261807
PMC: 5738113.
DOI: 10.1371/journal.ppat.1006758.
Effects of Alanyl-Glutamine Treatment on the Peritoneal Dialysis Effluent Proteome Reveal Pathomechanism-Associated Molecular Signatures.
Herzog R, Boehm M, Unterwurzacher M, Wagner A, Parapatics K, Majek P
Mol Cell Proteomics. 2017; 17(3):516-532.
PMID: 29208752
PMC: 5836375.
DOI: 10.1074/mcp.RA117.000186.
Quantitative Shotgun Proteomics Unveils Candidate Novel Esophageal Adenocarcinoma (EAC)-specific Proteins.
ONeill J, Pak H, Pairo-Castineira E, Save V, Paterson-Brown S, Nenutil R
Mol Cell Proteomics. 2017; 16(6):1138-1150.
PMID: 28336725
PMC: 5461543.
DOI: 10.1074/mcp.M116.065078.
Artemisinins Target GABA Receptor Signaling and Impair α Cell Identity.
Li J, Casteels T, Frogne T, Ingvorsen C, Honore C, Courtney M
Cell. 2016; 168(1-2):86-100.e15.
PMID: 27916275
PMC: 5236063.
DOI: 10.1016/j.cell.2016.11.010.
Expanding the Interactome of the Noncanonical NF-κB Signaling Pathway.
Willmann K, Sacco R, Martins R, Garncarz W, Krolo A, Knapp S
J Proteome Res. 2016; 15(9):2900-2909.
PMID: 27416764
PMC: 5295629.
DOI: 10.1021/acs.jproteome.5b01004.
An Inducible Retroviral Expression System for Tandem Affinity Purification Mass-Spectrometry-Based Proteomics Identifies Mixed Lineage Kinase Domain-like Protein (MLKL) as an Heat Shock Protein 90 (HSP90) Client.
Bigenzahn J, Fauster A, Rebsamen M, Kandasamy R, Scorzoni S, Vladimer G
Mol Cell Proteomics. 2016; 15(3):1139-50.
PMID: 26933192
PMC: 4813694.
DOI: 10.1074/mcp.o115.055350.
Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data.
Tu C, Sheng Q, Li J, Ma D, Shen X, Wang X
J Proteome Res. 2015; 14(11):4662-73.
PMID: 26390080
PMC: 4859434.
DOI: 10.1021/acs.jproteome.5b00536.
Proteome-wide drug and metabolite interaction mapping by thermal-stability profiling.
Huber K, Olek K, Muller A, Tan C, Bennett K, Colinge J
Nat Methods. 2015; 12(11):1055-7.
PMID: 26389571
PMC: 4629415.
DOI: 10.1038/nmeth.3590.
Software Analysis of Uncorrelated MS1 Peaks for Discovery of Post-Translational Modifications.
Pascal B, West G, Scharager-Tapia C, Flefil R, Moroni T, Martinez-Acedo P
J Am Soc Mass Spectrom. 2015; 26(12):2133-40.
PMID: 26265041
DOI: 10.1007/s13361-015-1229-4.
Pharmacological targeting of the Wdr5-MLL interaction in C/EBPα N-terminal leukemia.
Grebien F, Vedadi M, Getlik M, Giambruno R, Grover A, Avellino R
Nat Chem Biol. 2015; 11(8):571-578.
PMID: 26167872
PMC: 4511833.
DOI: 10.1038/nchembio.1859.