» Articles » PMID: 12831905

New Approaches to Analyzing Microbial Biodiversity Data

Overview
Specialty Microbiology
Date 2003 Jul 2
PMID 12831905
Citations 32
Authors
Affiliations
Soon will be listed here.
Abstract

Modern molecular techniques have revealed an extraordinary diversity of microorganisms, most of which are as yet uncharacterized. This poses a major challenge to microbial ecologists: how can one compare the microbial diversity of different environments when the vast majority of microbial taxa are usually unknown? Three statistical approaches developed by ecologists and evolutionary biologists--parametric estimation, nonparametric estimation and community phylogenetics--are proving to be promising tools to meet this challenge. The combination of these tools with molecular biology techniques allow the rigorous estimation and comparison of microbial diversity in different environments.

Citing Articles

Effect of Environmental Variation on Estimating the Bacterial Species Richness.

Chen Y, Kuang J, Jia P, Cadotte M, Huang L, Li J Front Microbiol. 2017; 8:690.

PMID: 28469618 PMC: 5395623. DOI: 10.3389/fmicb.2017.00690.


Mineral Ecology: Surface Specific Colonization and Geochemical Drivers of Biofilm Accumulation, Composition, and Phylogeny.

Jones A, Bennett P Front Microbiol. 2017; 8:491.

PMID: 28400754 PMC: 5368280. DOI: 10.3389/fmicb.2017.00491.


Modern molecular approaches for analyzing microbial diversity from mushroom compost ecosystem.

Agrawal P, Agrawal S, Shrivastava R 3 Biotech. 2017; 5(6):853-866.

PMID: 28324393 PMC: 4624149. DOI: 10.1007/s13205-015-0289-2.


Estimating and comparing microbial diversity in the presence of sequencing errors.

Chiu C, Chao A PeerJ. 2016; 4:e1634.

PMID: 26855872 PMC: 4741086. DOI: 10.7717/peerj.1634.


Forest-to-pasture conversion increases the diversity of the phylum Verrucomicrobia in Amazon rainforest soils.

Ranjan K, Paula F, Mueller R, Jesus E, Cenciani K, Bohannan B Front Microbiol. 2015; 6:779.

PMID: 26284056 PMC: 4519759. DOI: 10.3389/fmicb.2015.00779.