NEWT, a New Taxonomy Portal

Overview

Journal Nucleic Acids Res

Publisher Oxford University Press

Specialty Biochemistry

Date 2003 Jun 26

PMID 12824428

Citations 15

Authors

I Q H Phan

S F Pilbout

W Fleischmann

A Bairoch

Affiliations

Soon will be listed here.

Abstract

NEWT is a new taxonomy portal to the SWISS-PROT protein sequence knowledgebase. It contains taxonomy data, which is updated daily, for the complete set of species represented in SWISS-PROT, as well as those stored at the NCBI. Users can navigate through the taxonomy tree and access corresponding SWISS-PROT protein entries. In addition, a manually curated selection of external links allows access to specific information on selected species. NEWT is available at http://www.ebi.ac.uk/newt/.

Citing Articles

The variable quality of metadata about biological samples used in biomedical experiments.

Goncalves R, Musen M Sci Data. 2019; 6:190021.

PMID: 30778255 PMC: 6380228. DOI: 10.1038/sdata.2019.21.

From Peptidome to PRIDE: public proteomics data migration at a large scale.

Csordas A, Wang R, Rios D, Reisinger F, Foster J, Slotta D Proteomics. 2013; 13(10-11):1692-5.

PMID: 23533138 PMC: 3717177. DOI: 10.1002/pmic.201200514.

Application of text-mining for updating protein post-translational modification annotation in UniProtKB.

Veuthey A, Bridge A, Gobeill J, Ruch P, McEntyre J, Bougueleret L BMC Bioinformatics. 2013; 14:104.

PMID: 23517090 PMC: 3660268. DOI: 10.1186/1471-2105-14-104.

Transcriptomics of in vitro immune-stimulated hemocytes from the Manila clam Ruditapes philippinarum using high-throughput sequencing.

Moreira R, Balseiro P, Planas J, Fuste B, Beltran S, Novoa B PLoS One. 2012; 7(4):e35009.

PMID: 22536348 PMC: 3334963. DOI: 10.1371/journal.pone.0035009.

Polyploidy in fungi: evolution after whole-genome duplication.

Albertin W, Marullo P Proc Biol Sci. 2012; 279(1738):2497-509.

PMID: 22492065 PMC: 3350714. DOI: 10.1098/rspb.2012.0434.

References

Wheeler D, Chappey C, Lash A, Leipe D, Madden T, Schuler G . Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 1999; 28(1):10-4. PMC: 102437. DOI: 10.1093/nar/28.1.10. View

Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel R, Bairoch A . ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 2003; 31(13):3784-8. PMC: 168970. DOI: 10.1093/nar/gkg563. View

Apweiler R, Biswas M, Fleischmann W, Kanapin A, Karavidopoulou Y, Kersey P . Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes. Nucleic Acids Res. 2000; 29(1):44-8. PMC: 29822. DOI: 10.1093/nar/29.1.44. View

Bairoch A, Apweiler R . The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 1999; 28(1):45-8. PMC: 102476. DOI: 10.1093/nar/28.1.45. View