» Articles » PMID: 12777765

Phasing on Anomalous Signal of Sulfurs: What is the Limit?

Overview
Specialty Chemistry
Date 2003 Jun 5
PMID 12777765
Citations 20
Authors
Affiliations
Soon will be listed here.
Abstract

Recent years have witnessed significant advancements in X-ray data-acquisition techniques and phasing algorithms, which have made possible the successful use of a very small anomalous diffraction signal for the solution of crystal structures of macromolecules. Two crystal structures, a 44 kDa glucose isomerase containing nine sulfurs and a 33 kDa xylanase containing five sulfurs, have been solved from single-wavelength anomalous data using widely available methods and programs. These two enzymes contain less sulfur than most proteins in the bacterial or eukaryotic proteomes, providing a Bijvoet ratio of about 0.6%. For glucose isomerase the automatically interpretable electron-density maps could be obtained at high as well as low resolution. The S-SAD approach relies on the anomalous signal of sulfur naturally occurring in proteins and alleviates all need for sample derivatization. It may therefore be applicable to all protein crystals able to provide accurate diffraction data.

Citing Articles

crystal structure determination of double stranded RNA binding domain using only the sulfur anomalous diffraction in SAD phasing.

Guimaraes B, Golinelli-Pimpaneau B Curr Res Struct Biol. 2021; 3:112-120.

PMID: 34235491 PMC: 8244422. DOI: 10.1016/j.crstbi.2021.05.002.


Many Ways to Derivatize Macromolecules and Their Crystals for Phasing.

Dauter M, Dauter Z Methods Mol Biol. 2017; 1607:349-356.

PMID: 28573580 PMC: 5557042. DOI: 10.1007/978-1-4939-7000-1_14.


The hidden treasure in your data: phasing with unexpected weak anomalous scatterers from routine data sets.

Hegde R, Fedorov A, Sauder J, Burley S, Almo S, Ramagopal U Acta Crystallogr F Struct Biol Commun. 2017; 73(Pt 4):184-195.

PMID: 28368276 PMC: 5379167. DOI: 10.1107/S2053230X17002680.


Native phasing of x-ray free-electron laser data for a G protein-coupled receptor.

Batyuk A, Galli L, Ishchenko A, Han G, Gati C, Popov P Sci Adv. 2016; 2(9):e1600292.

PMID: 27679816 PMC: 5035125. DOI: 10.1126/sciadv.1600292.


Direct-methods structure determination of a trypanosome RNA-editing substrate fragment with translational pseudosymmetry.

Mooers B Acta Crystallogr D Struct Biol. 2016; 72(Pt 4):477-87.

PMID: 27050127 PMC: 4822560. DOI: 10.1107/S2059798316001224.