Fagundes N, Bisso-Machado R, Figueiredo P, Varal M, Zani A
Genome Biol Evol. 2022; 14(5).
PMID: 35535669
PMC: 9086759.
DOI: 10.1093/gbe/evac055.
Tan S, Ma H, Wang J, Wang M, Wang M, Yin H
Nat Commun. 2021; 12(1):4280.
PMID: 34257290
PMC: 8277862.
DOI: 10.1038/s41467-021-24585-9.
Sadovsky M, Senashova M, Malyshev A
BMC Bioinformatics. 2020; 21(Suppl 2):83.
PMID: 32164552
PMC: 7068912.
DOI: 10.1186/s12859-020-3350-z.
Keidar D, Doron C, Kashkush K
Plant Cell Rep. 2017; 37(2):193-208.
PMID: 29164313
PMC: 5787218.
DOI: 10.1007/s00299-017-2213-1.
Sibley C, Emmett W, Blazquez L, Faro A, Haberman N, Briese M
Nature. 2015; 521(7552):371-375.
PMID: 25970246
PMC: 4471124.
DOI: 10.1038/nature14466.
An evolutionary classification of genomic function.
Graur D, Zheng Y, Azevedo R
Genome Biol Evol. 2015; 7(3):642-5.
PMID: 25635041
PMC: 5322545.
DOI: 10.1093/gbe/evv021.
On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE.
Graur D, Zheng Y, Price N, Azevedo R, Zufall R, Elhaik E
Genome Biol Evol. 2013; 5(3):578-90.
PMID: 23431001
PMC: 3622293.
DOI: 10.1093/gbe/evt028.
Out with the "junk DNA" phrase.
Wagner J
J Forensic Sci. 2012; 58(1):292-4.
PMID: 22957975
PMC: 8587484.
DOI: 10.1111/j.1556-4029.2012.02252.x.
DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum.
Kumar A, Bassi F, Paux E, Al-Azzam O, Michalak de Jimenez M, Denton A
BMC Genomics. 2012; 13:339.
PMID: 22827734
PMC: 3443642.
DOI: 10.1186/1471-2164-13-339.
The ghosts in the machine: DNA methylation and the mystery of differentiation.
Briones V, Muegge K
Biochim Biophys Acta. 2012; 1819(7):757-62.
PMID: 22381140
PMC: 7477944.
DOI: 10.1016/j.bbagrm.2012.02.013.
The transcript repeat element: the human Alu sequence as a component of gene networks influencing cancer.
Moolhuijzen P, Kulski J, Dunn D, Schibeci D, Barrero R, Gojobori T
Funct Integr Genomics. 2010; 10(3):307-19.
PMID: 20393868
DOI: 10.1007/s10142-010-0168-1.
Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation.
Kikuchi K, Fukuda M, Ito T, Inoue M, Yokoi T, Chiku S
Nucleic Acids Res. 2009; 37(15):4987-5000.
PMID: 19531736
PMC: 2731886.
DOI: 10.1093/nar/gkp426.
Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm.
DeBarry J, Liu R, Bennetzen J
BMC Bioinformatics. 2008; 9:235.
PMID: 18474116
PMC: 2412881.
DOI: 10.1186/1471-2105-9-235.
Birth and death of gene overlaps in vertebrates.
Makalowska I, Lin C, Hernandez K
BMC Evol Biol. 2007; 7:193.
PMID: 17939861
PMC: 2151771.
DOI: 10.1186/1471-2148-7-193.
Exonization of the LTR transposable elements in human genome.
Piriyapongsa J, Polavarapu N, Borodovsky M, McDonald J
BMC Genomics. 2007; 8:291.
PMID: 17725822
PMC: 2008291.
DOI: 10.1186/1471-2164-8-291.
A new retroposed gene in Drosophila heterochromatin detected by microarray-based comparative genomic hybridization.
Fan C, Long M
J Mol Evol. 2006; 64(2):272-83.
PMID: 17177089
DOI: 10.1007/s00239-006-0169-9.
Molecular phylogeny of the antiangiogenic and neurotrophic serpin, pigment epithelium derived factor in vertebrates.
Xu X, Zhang S, Barnstable C, Tombran-Tink J
BMC Genomics. 2006; 7:248.
PMID: 17020603
PMC: 1609119.
DOI: 10.1186/1471-2164-7-248.
Self-engineering capabilities of bacteria.
Ben-Jacob E, Levine H
J R Soc Interface. 2006; 3(6):197-214.
PMID: 16849231
PMC: 1618491.
DOI: 10.1098/rsif.2005.0089.
Splice variant of mouse Stam2 mRNA in nervous and muscle tissue contains additional exon with stop codon within region coding for VHS domain.
Curlin M, Lucic V, Gajovic S
Croat Med J. 2006; 47(1):16-24.
PMID: 16489693
PMC: 2080372.
LTR retrotransposon-gene associations in Drosophila melanogaster.
Ganko E, Greene C, Lewis J, Bhattacharjee V, McDonald J
J Mol Evol. 2006; 62(1):111-20.
PMID: 16408244
DOI: 10.1007/s00239-004-0312-4.
