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Identification of Mycobacterial Species by PCR Sequencing of Quinolone Resistance-determining Regions of DNA Gyrase Genes

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Specialty Microbiology
Date 2003 Mar 8
PMID 12624075
Citations 25
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Abstract

The determination of the amino acid sequence of quinolone resistance-determining regions (QRDRs) in the A and B subunits of DNA gyrase is the molecular test for the detection of fluoroquinolone resistance in mycobacteria. We looked to see if the assignment of mycobacterial species could be obtained simultaneously by analysis of the corresponding nucleotide sequences. PCR sequencing of gyrA and gyrB QRDRs was performed for 133 reference and clinical strains of 21 mycobacterial species commonly isolated in clinical laboratories. Nucleotide sequences of gyrA and gyrB QRDRs were species specific, regardless of fluoroquinolone susceptibility.

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References
1.
Roth A, Reischl U, Streubel A, Naumann L, Kroppenstedt R, Habicht M . Novel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases. J Clin Microbiol. 2000; 38(3):1094-104. PMC: 86348. DOI: 10.1128/JCM.38.3.1094-1104.2000. View

2.
Kasai H, Ezaki T, Harayama S . Differentiation of phylogenetically related slowly growing mycobacteria by their gyrB sequences. J Clin Microbiol. 2000; 38(1):301-8. PMC: 88713. DOI: 10.1128/JCM.38.1.301-308.2000. View

3.
Blackwood K, He C, Gunton J, Turenne C, Wolfe J, Kabani A . Evaluation of recA sequences for identification of Mycobacterium species. J Clin Microbiol. 2000; 38(8):2846-52. PMC: 87126. DOI: 10.1128/JCM.38.8.2846-2852.2000. View

4.
Stinear T, Jenkin G, Johnson P, Davies J . Comparative genetic analysis of Mycobacterium ulcerans and Mycobacterium marinum reveals evidence of recent divergence. J Bacteriol. 2000; 182(22):6322-30. PMC: 94777. DOI: 10.1128/JB.182.22.6322-6330.2000. View

5.
Kim B, Lee K, Park B, Bai G, Kim S, Kook Y . Differentiation of mycobacterial species by PCR-restriction analysis of DNA (342 base pairs) of the RNA polymerase gene (rpoB). J Clin Microbiol. 2001; 39(6):2102-9. PMC: 88096. DOI: 10.1128/JCM.39.6.2102-2109.2001. View