Kuzminov A
J Bacteriol. 2024; 206(3):e0021123.
PMID: 38358278
PMC: 10994824.
DOI: 10.1128/jb.00211-23.
Shao W, Bi X, Pan Y, Gao B, Wu J, Yin Y
Nat Chem Biol. 2021; 18(1):70-80.
PMID: 34916619
DOI: 10.1038/s41589-021-00904-5.
Rippe K
Cold Spring Harb Perspect Biol. 2021; 14(2).
PMID: 34127447
PMC: 8805649.
DOI: 10.1101/cshperspect.a040683.
Lu J, Chang L, Li T, Wang T, Yin Y, Zhan G
Cell Res. 2021; 31(6):613-630.
PMID: 33514913
PMC: 8169921.
DOI: 10.1038/s41422-020-00466-6.
Pouokam M, Cruz B, Burgess S, Segal M, Vazquez M, Arsuaga J
Sci Rep. 2019; 9(1):6795.
PMID: 31043625
PMC: 6494875.
DOI: 10.1038/s41598-019-42967-4.
Novel genomic rearrangements mediated by multiple genetic elements in Streptococcus pyogenes M23ND confer potential for evolutionary persistence.
Bao Y, Liang Z, Mayfield J, McShan W, Lee S, Ploplis V
Microbiology (Reading). 2016; 162(8):1346-1359.
PMID: 27329479
PMC: 5903213.
DOI: 10.1099/mic.0.000326.
Analysis tools for the interplay between genome layout and regulation.
Bouyioukos C, Elati M, Kepes F
BMC Bioinformatics. 2016; 17 Suppl 5:191.
PMID: 27294345
PMC: 4905612.
DOI: 10.1186/s12859-016-1047-0.
An Overview of Genome Organization and How We Got There: from FISH to Hi-C.
Fraser J, Williamson I, Bickmore W, Dostie J
Microbiol Mol Biol Rev. 2015; 79(3):347-72.
PMID: 26223848
PMC: 4517094.
DOI: 10.1128/MMBR.00006-15.
The nucleolus: a raft adrift in the nuclear sea or the keystone in nuclear structure?.
OSullivan J, Pai D, Cridge A, Engelke D, Ganley A
Biomol Concepts. 2014; 4(3):277-86.
PMID: 25436580
PMC: 5100006.
DOI: 10.1515/bmc-2012-0043.
DNA movies and panspermia.
Norris V, Grondin Y
Life (Basel). 2014; 1(1):9-18.
PMID: 25382053
PMC: 4187124.
DOI: 10.3390/life1010009.
The missing story behind Genome Wide Association Studies: single nucleotide polymorphisms in gene deserts have a story to tell.
Schierding W, Cutfield W, OSullivan J
Front Genet. 2014; 5:39.
PMID: 24600475
PMC: 3927098.
DOI: 10.3389/fgene.2014.00039.
Spatial organization of RNA polymerase II inside a mammalian cell nucleus revealed by reflected light-sheet superresolution microscopy.
Zhao Z, Roy R, Gebhardt J, Suter D, Chapman A, Xie X
Proc Natl Acad Sci U S A. 2014; 111(2):681-6.
PMID: 24379392
PMC: 3896202.
DOI: 10.1073/pnas.1318496111.
The role of nuclear bodies in gene expression and disease.
Morimoto M, Boerkoel C
Biology (Basel). 2013; 2(3):976-1033.
PMID: 24040563
PMC: 3771687.
DOI: 10.3390/biology2030976.
Stress-induced condensation of bacterial genomes results in re-pairing of sister chromosomes: implications for double strand DNA break repair.
Shechter N, Zaltzman L, Weiner A, Brumfeld V, Shimoni E, Fridmann-Sirkis Y
J Biol Chem. 2013; 288(35):25659-25667.
PMID: 23884460
PMC: 3757227.
DOI: 10.1074/jbc.M113.473025.
Biological implications and regulatory mechanisms of long-range chromosomal interactions.
Wei Z, Huang D, Gao F, Chang W, An W, Coetzee G
J Biol Chem. 2013; 288(31):22369-77.
PMID: 23779110
PMC: 3829327.
DOI: 10.1074/jbc.R113.485292.
DNA looping in prokaryotes: experimental and theoretical approaches.
Cournac A, Plumbridge J
J Bacteriol. 2013; 195(6):1109-19.
PMID: 23292776
PMC: 3591992.
DOI: 10.1128/JB.02038-12.
PreCisIon: PREdiction of CIS-regulatory elements improved by gene's positION.
Elati M, Nicolle R, Junier I, Fernandez D, Fekih R, Font J
Nucleic Acids Res. 2012; 41(3):1406-15.
PMID: 23241390
PMC: 3561985.
DOI: 10.1093/nar/gks1286.
Transcription factories.
Rieder D, Trajanoski Z, McNally J
Front Genet. 2012; 3:221.
PMID: 23109938
PMC: 3478587.
DOI: 10.3389/fgene.2012.00221.
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling.
Kalhor R, Tjong H, Jayathilaka N, Alber F, Chen L
Nat Biotechnol. 2011; 30(1):90-8.
PMID: 22198700
PMC: 3782096.
DOI: 10.1038/nbt.2057.
Unravelling global genome organization by 3C-seq.
Tanizawa H, Noma K
Semin Cell Dev Biol. 2011; 23(2):213-21.
PMID: 22120510
PMC: 3362197.
DOI: 10.1016/j.semcdb.2011.11.003.
