Jara J, Alba C, Del Campo R, Fernandez L, Saenz de Pipaon M, Rodriguez J
Front Pediatr. 2024; 12:1397398.
PMID: 38952433
PMC: 11215057.
DOI: 10.3389/fped.2024.1397398.
Liu E, Prinzi A, Borjan J, Aitken S, Bradford P, Wright W
JAC Antimicrob Resist. 2023; 5(4):dlad097.
PMID: 37583473
PMC: 10424884.
DOI: 10.1093/jacamr/dlad097.
Murr L, Huber I, Pavlovic M, Guertler P, Messelhaeusser U, Weiss M
Microorganisms. 2022; 10(11).
PMID: 36363712
PMC: 9698462.
DOI: 10.3390/microorganisms10112120.
Addablah A, Kakou-Ngazoa S, Akpa E, MBourou Ndombi F, Adioumani E, Koudou A
Phage (New Rochelle). 2022; 2(3):104-111.
PMID: 36161244
PMC: 9041496.
DOI: 10.1089/phage.2020.0047.
Montelongo C, Mores C, Putonti C, Wolfe A, Abouelfetouh A
Microbiol Spectr. 2022; 10(4):e0241321.
PMID: 35727037
PMC: 9431571.
DOI: 10.1128/spectrum.02413-21.
Validation of a multilocus genotyping scheme for subtyping for epidemiological purposes.
Robinson G, Perez-Cordon G, Hamilton C, Katzer F, Connelly L, Alexander C
Food Waterborne Parasitol. 2022; 27:e00151.
PMID: 35498551
PMC: 9043402.
DOI: 10.1016/j.fawpar.2022.e00151.
Highly Conserved Gene of Pneumocystis jirovecii in Patients with or without Prior Exposure to Echinocandins.
Bonnet P, Gal S, Hoffmann C, Morio F, Diabira F, de Quelen A
Antimicrob Agents Chemother. 2021; 66(1):e0156321.
PMID: 34723629
PMC: 8765322.
DOI: 10.1128/AAC.01563-21.
Comparison of Whole Genome (wg-) and Core Genome (cg-) MLST (BioNumerics) Versus SNP Variant Calling for Epidemiological Investigation of .
Blanc D, Magalhaes B, Koenig I, Senn L, Grandbastien B
Front Microbiol. 2020; 11:1729.
PMID: 32793169
PMC: 7387498.
DOI: 10.3389/fmicb.2020.01729.
Diversity within species: interpreting strains in microbiomes.
Van Rossum T, Ferretti P, Maistrenko O, Bork P
Nat Rev Microbiol. 2020; 18(9):491-506.
PMID: 32499497
PMC: 7610499.
DOI: 10.1038/s41579-020-0368-1.
Diversity in Réunion, an Overseas French Island in Indian Ocean.
Gal S, Hoarau G, Bertolotti A, Negri S, Le Nan N, Bouchara J
Front Microbiol. 2020; 11:127.
PMID: 32117149
PMC: 7019000.
DOI: 10.3389/fmicb.2020.00127.
Potential group B Streptococcus interspecies transmission between cattle and people in Colombian dairy farms.
Cobo-Angel C, Jaramillo-Jaramillo A, Palacio-Aguilera M, Jurado-Vargas L, Calvo-Villegas E, Ospina-Loaiza D
Sci Rep. 2019; 9(1):14025.
PMID: 31575879
PMC: 6773701.
DOI: 10.1038/s41598-019-50225-w.
Evaluating sub-typing methods for pathogenic Yersinia enterocolitica to support outbreak investigations in New Zealand.
Strydom H, Wang J, Paine S, Dyet K, Cullen K, Wright J
Epidemiol Infect. 2019; 147:e186.
PMID: 31364520
PMC: 6518587.
DOI: 10.1017/S0950268819000773.
Methicillin-resistant Staphylococcus aureus among urban rodents, house shrews, and patients in Guangzhou, Southern China.
Ge J, Zhong X, Xiong Y, Qiu M, Huo S, Chen X
BMC Vet Res. 2019; 15(1):260.
PMID: 31345215
PMC: 6659301.
DOI: 10.1186/s12917-019-2012-8.
Interpretation of Whole-Genome Sequencing for Enteric Disease Surveillance and Outbreak Investigation.
Besser J, Carleton H, Trees E, Stroika S, Hise K, Wise M
Foodborne Pathog Dis. 2019; 16(7):504-512.
PMID: 31246502
PMC: 6653782.
DOI: 10.1089/fpd.2019.2650.
Pneumocystis primary infection in infancy: Additional French data and review of the literature.
Nevez G, Guillaud-Saumur T, Cros P, Papon N, Vallet S, Quinio D
Med Mycol. 2019; 58(2):163-171.
PMID: 31127850
PMC: 7107579.
DOI: 10.1093/mmy/myz040.
Shared genome analyses of notable listeriosis outbreaks, highlighting the critical importance of epidemiological evidence, input datasets and interpretation criteria.
Reimer A, Weedmark K, Petkau A, Peterson C, Walker M, Knox N
Microb Genom. 2019; 5(1).
PMID: 30648944
PMC: 6412057.
DOI: 10.1099/mgen.0.000237.
Diversity of Yersinia enterocolitica isolated from pigs in a French slaughterhouse over 2 years.
Raymond P, Houard E, Denis M, Esnault E
Microbiologyopen. 2018; 8(6):e00751.
PMID: 30350482
PMC: 6562139.
DOI: 10.1002/mbo3.751.
Methicillin-Resistant Staphylococcus aureus: Molecular Characterization, Evolution, and Epidemiology.
Lakhundi S, Zhang K
Clin Microbiol Rev. 2018; 31(4).
PMID: 30209034
PMC: 6148192.
DOI: 10.1128/CMR.00020-18.
The Epidemiological Significance and Temporal Stability of Mycobacterial Interspersed Repetitive Units-Variable Number of Tandem Repeats-Based Method Applied to in China.
Li Y, Hu Y, Mansjo M, Zhao Q, Jiang W, Ghebremichael S
Int J Environ Res Public Health. 2018; 15(4).
PMID: 29673235
PMC: 5923824.
DOI: 10.3390/ijerph15040782.
A Validation Approach of an End-to-End Whole Genome Sequencing Workflow for Source Tracking of and .
Portmann A, Fournier C, Gimonet J, Ngom-Bru C, Barretto C, Baert L
Front Microbiol. 2018; 9:446.
PMID: 29593690
PMC: 5861296.
DOI: 10.3389/fmicb.2018.00446.
