Popchock A, Hedouin S, Mao Y, Asbury C, Stergachis A, Biggins S
EMBO J. 2025; 44(5):1488-1511.
PMID: 39809842
PMC: 11876619.
DOI: 10.1038/s44318-024-00345-5.
Mariani L, Liu X, Lee K, Gisselbrecht S, Cole P, Bulyk M
bioRxiv. 2024; .
PMID: 39463949
PMC: 11507811.
DOI: 10.1101/2024.09.02.610559.
Masoudi-Sobhanzadeh Y, Li S, Peng Y, Panchenko A
Nucleic Acids Res. 2024; 52(15):8734-8745.
PMID: 39036965
PMC: 11347144.
DOI: 10.1093/nar/gkae623.
Schwartz U, Komatsu T, Huber C, Lagadec F, Baumgartl C, Silberhorn E
EMBO J. 2023; 42(19):e114162.
PMID: 37641864
PMC: 10548178.
DOI: 10.15252/embj.2023114162.
Popchock A, Larson J, Dubrulle J, Asbury C, Biggins S
EMBO J. 2023; 42(17):e114534.
PMID: 37469281
PMC: 10476280.
DOI: 10.15252/embj.2023114534.
Uracil-DNA glycosylase efficiency is modulated by substrate rigidity.
Orndorff P, Poddar S, Owens A, Kumari N, Ugaz B, Amin S
Sci Rep. 2023; 13(1):3915.
PMID: 36890276
PMC: 9995336.
DOI: 10.1038/s41598-023-30620-0.
Direct observation of coordinated assembly of individual native centromeric nucleosomes.
Popchock A, Larson J, Dubrulle J, Asbury C, Biggins S
bioRxiv. 2023; .
PMID: 36711558
PMC: 9882320.
DOI: 10.1101/2023.01.20.524981.
The Role of PARP1 and PAR in ATP-Independent Nucleosome Reorganisation during the DNA Damage Response.
Belousova E, Lavrik O
Genes (Basel). 2023; 14(1).
PMID: 36672853
PMC: 9859207.
DOI: 10.3390/genes14010112.
Nucleosome Core Particle Reconstitution with Recombinant Histones and Widom 601 DNA.
Hammonds E, Morrison E
Methods Mol Biol. 2022; 2599:177-190.
PMID: 36427150
DOI: 10.1007/978-1-0716-2847-8_13.
Preparation of Recombinant Histones and Widom 601 DNA for Reconstitution of Nucleosome Core Particles.
Paintsil E, Morrison E
Methods Mol Biol. 2022; 2599:163-175.
PMID: 36427149
DOI: 10.1007/978-1-0716-2847-8_12.
Enhanced nucleosome assembly at CpG sites containing an extended 5-methylcytosine analogue.
Tomkuviene M, Meier M, Ikasalaite D, Wildenauer J, Kairys V, Klimasauskas S
Nucleic Acids Res. 2022; 50(11):6549-6561.
PMID: 35648439
PMC: 9226530.
DOI: 10.1093/nar/gkac444.
The Active Mechanism of Nucleosome Depletion by Poly(dA:dT) Tracts In Vivo.
Barnes T, Korber P
Int J Mol Sci. 2021; 22(15).
PMID: 34360997
PMC: 8347975.
DOI: 10.3390/ijms22158233.
Effect of DNA Flexibility on Complex Formation of a Cationic Nanoparticle with Double-Stranded DNA.
Bae S, Oh I, Yoo J, Kim J
ACS Omega. 2021; 6(29):18728-18736.
PMID: 34337212
PMC: 8319935.
DOI: 10.1021/acsomega.1c01709.
A Primer on the oxDNA Model of DNA: When to Use it, How to Simulate it and How to Interpret the Results.
Sengar A, Ouldridge T, Henrich O, Rovigatti L, Sulc P
Front Mol Biosci. 2021; 8:693710.
PMID: 34235181
PMC: 8256390.
DOI: 10.3389/fmolb.2021.693710.
Substrate deformation regulates DRM2-mediated DNA methylation in plants.
Fang J, Leichter S, Jiang J, Biswal M, Lu J, Zhang Z
Sci Adv. 2021; 7(23).
PMID: 34078593
PMC: 8172135.
DOI: 10.1126/sciadv.abd9224.
Peculiarities of Gene Regulation and Chromatin Structure.
Watzlowik M, Das S, Meissner M, Langst G
Int J Mol Sci. 2021; 22(10).
PMID: 34068393
PMC: 8153576.
DOI: 10.3390/ijms22105168.
Genome information processing by the INO80 chromatin remodeler positions nucleosomes.
Oberbeckmann E, Krietenstein N, Niebauer V, Wang Y, Schall K, Moldt M
Nat Commun. 2021; 12(1):3231.
PMID: 34050142
PMC: 8163841.
DOI: 10.1038/s41467-021-23016-z.
The "Genomic Code": DNA Pervasively Moulds Chromatin Structures Leaving no Room for "Junk".
Bernardi G
Life (Basel). 2021; 11(4).
PMID: 33924668
PMC: 8070607.
DOI: 10.3390/life11040342.
Stability and folding pathways of tetra-nucleosome from six-dimensional free energy surface.
Ding X, Lin X, Zhang B
Nat Commun. 2021; 12(1):1091.
PMID: 33597548
PMC: 7889939.
DOI: 10.1038/s41467-021-21377-z.
On the role of transcription in positioning nucleosomes.
Jiang Z, Zhang B
PLoS Comput Biol. 2021; 17(1):e1008556.
PMID: 33417594
PMC: 7819601.
DOI: 10.1371/journal.pcbi.1008556.
