Maselko M, Heinsch S, Chacon J, Harcombe W, Smanski M
Nat Commun. 2017; 8(1):883.
PMID: 29026112
PMC: 5638955.
DOI: 10.1038/s41467-017-01007-3.
Chibucos M, Siegele D, Hu J, Giglio M
Methods Mol Biol. 2016; 1446:245-259.
PMID: 27812948
PMC: 6377151.
DOI: 10.1007/978-1-4939-3743-1_18.
Chibucos M, Mungall C, Balakrishnan R, Christie K, Huntley R, White O
Database (Oxford). 2014; 2014.
PMID: 25052702
PMC: 4105709.
DOI: 10.1093/database/bau075.
Puniyani K, Xing E
PLoS Comput Biol. 2013; 9(10):e1003227.
PMID: 24130465
PMC: 3794902.
DOI: 10.1371/journal.pcbi.1003227.
Pruteanu-Malinici I, Majoros W, Ohler U
Bioinformatics. 2013; 29(13):i27-35.
PMID: 23812993
PMC: 3694682.
DOI: 10.1093/bioinformatics/btt206.
Characterization of the shsp genes in Drosophila buzzatii and association between the frequency of Valine mutations in hsp23 and climatic variables along a longitudinal gradient in Australia.
Frydenberg J, Barker J, Loeschcke V
Cell Stress Chaperones. 2009; 15(3):271-80.
PMID: 19806471
PMC: 2866996.
DOI: 10.1007/s12192-009-0140-y.
Apollo: a community resource for genome annotation editing.
Lee E, Harris N, Gibson M, Chetty R, Lewis S
Bioinformatics. 2009; 25(14):1836-7.
PMID: 19439563
PMC: 2705230.
DOI: 10.1093/bioinformatics/btp314.
The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation.
Loevenich S, Brunner E, King N, Deutsch E, Stein S, Aebersold R
BMC Bioinformatics. 2009; 10:59.
PMID: 19210778
PMC: 2648944.
DOI: 10.1186/1471-2105-10-59.
Gramene: development and integration of trait and gene ontologies for rice.
Jaiswal P, Ware D, Ni J, Chang K, Zhao W, Schmidt S
Comp Funct Genomics. 2008; 3(2):132-6.
PMID: 18628886
PMC: 2447246.
DOI: 10.1002/cfg.156.
Wiser (tsl): a recessive X-linked temperature-sensitive lethal mutation that affects the wings and the eyes in Drosophila melanogaster.
Mela A, Tsitilou S, Yannopoulos G
Genetica. 2008; 135(3):333-45.
PMID: 18536996
DOI: 10.1007/s10709-008-9281-7.
The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant.
Ilic K, Kellogg E, Jaiswal P, Zapata F, Stevens P, Vincent L
Plant Physiol. 2006; 143(2):587-99.
PMID: 17142475
PMC: 1803752.
DOI: 10.1104/pp.106.092825.
Transcriptional response to alcohol exposure in Drosophila melanogaster.
Morozova T, Anholt R, Mackay T
Genome Biol. 2006; 7(10):R95.
PMID: 17054780
PMC: 1794562.
DOI: 10.1186/gb-2006-7-10-r95.
Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools.
Thomas P, Kejariwal A, Guo N, Mi H, Campbell M, Muruganujan A
Nucleic Acids Res. 2006; 34(Web Server issue):W645-50.
PMID: 16912992
PMC: 1538848.
DOI: 10.1093/nar/gkl229.
The mushroom body defect gene product is an essential component of the meiosis II spindle apparatus in Drosophila oocytes.
Yu J, Guan Z, Nash H
Genetics. 2006; 173(1):243-53.
PMID: 16510791
PMC: 1461445.
DOI: 10.1534/genetics.105.051557.
The rarity of gene shuffling in conserved genes.
Conant G, Wagner A
Genome Biol. 2005; 6(6):R50.
PMID: 15960802
PMC: 1175970.
DOI: 10.1186/gb-2005-6-6-r50.
Transvection at the vestigial locus of Drosophila melanogaster.
Coulthard A, Nolan N, Bell J, Hilliker A
Genetics. 2005; 170(4):1711-21.
PMID: 15944352
PMC: 1449749.
DOI: 10.1534/genetics.105.041400.
Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster.
Tupy J, Bailey A, Dailey G, Evans-Holm M, Siebel C, Misra S
Proc Natl Acad Sci U S A. 2005; 102(15):5495-500.
PMID: 15809421
PMC: 555963.
DOI: 10.1073/pnas.0501422102.
A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome.
Yandell M, Bailey A, Misra S, Shu S, Wiel C, Evans-Holm M
Proc Natl Acad Sci U S A. 2005; 102(5):1566-71.
PMID: 15668397
PMC: 545494.
DOI: 10.1073/pnas.0409421102.
The PANTHER database of protein families, subfamilies, functions and pathways.
Mi H, Lazareva-Ulitsky B, Loo R, Kejariwal A, Vandergriff J, Rabkin S
Nucleic Acids Res. 2004; 33(Database issue):D284-8.
PMID: 15608197
PMC: 540032.
DOI: 10.1093/nar/gki078.
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
Berman B, Pfeiffer B, Laverty T, Salzberg S, Rubin G, Eisen M
Genome Biol. 2004; 5(9):R61.
PMID: 15345045
PMC: 522868.
DOI: 10.1186/gb-2004-5-9-r61.