Srinak N, Chiewchankaset P, Kalapanulak S, Panichnumsin P, Saithong T
PLoS Comput Biol. 2024; 20(10):e1012533.
PMID: 39418284
PMC: 11521316.
DOI: 10.1371/journal.pcbi.1012533.
Lange E, Kranert L, Kruger J, Benndorf D, Heyer R
Front Microbiol. 2024; 15:1368377.
PMID: 38962127
PMC: 11220171.
DOI: 10.3389/fmicb.2024.1368377.
Taniguchi T, Okahashi N, Matsuda F
Metab Eng Commun. 2024; 18:e00239.
PMID: 38883865
PMC: 11176794.
DOI: 10.1016/j.mec.2024.e00239.
Dvorak P, Buryskova B, Popelarova B, Ebert B, Botka T, Bujdos D
Nat Commun. 2024; 15(1):2666.
PMID: 38531855
PMC: 10965963.
DOI: 10.1038/s41467-024-46812-9.
Hogg M, Wolfschmitt E, Wachter U, Zink F, Radermacher P, Vogt J
Biomolecules. 2024; 14(1).
PMID: 38254698
PMC: 10813356.
DOI: 10.3390/biom14010098.
Bayesian C-Metabolic Flux Analysis of Parallel Tracer Experiments in Granulocytes: A Directional Shift within the Non-Oxidative Pentose Phosphate Pathway Supports Phagocytosis.
Hogg M, Wolfschmitt E, Wachter U, Zink F, Radermacher P, Vogt J
Metabolites. 2024; 14(1).
PMID: 38248827
PMC: 10820746.
DOI: 10.3390/metabo14010024.
ICON-GEMs: integration of co-expression network in genome-scale metabolic models, shedding light through systems biology.
Paklao T, Suratanee A, Plaimas K
BMC Bioinformatics. 2023; 24(1):492.
PMID: 38129786
PMC: 10740312.
DOI: 10.1186/s12859-023-05599-0.
Inferring mitochondrial and cytosolic metabolism by coupling isotope tracing and deconvolution.
Stern A, Fokra M, Sarvin B, Alrahem A, Lee W, Aizenshtein E
Nat Commun. 2023; 14(1):7525.
PMID: 37980339
PMC: 10657349.
DOI: 10.1038/s41467-023-42824-z.
Improved 13C metabolic flux analysis in Escherichia coli metabolism: application of a high-resolution MS (GC-EI-QTOF) for comprehensive assessment of MS/MS fragments.
Richter C, Grafahrend-Belau E, Ziegler J, Raorane M, Junker B
J Ind Microbiol Biotechnol. 2023; 50(1).
PMID: 37960978
PMC: 10716738.
DOI: 10.1093/jimb/kuad039.
BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale.
Backman T, Schenk C, Radivojevic T, Ando D, Singh J, Czajka J
PLoS Comput Biol. 2023; 19(11):e1011111.
PMID: 37948450
PMC: 10664898.
DOI: 10.1371/journal.pcbi.1011111.
A pathogen-specific isotope tracing approach reveals metabolic activities and fluxes of intracellular Salmonella.
Mitosch K, Beyss M, Phapale P, Drotleff B, Noh K, Alexandrov T
PLoS Biol. 2023; 21(8):e3002198.
PMID: 37594988
PMC: 10468081.
DOI: 10.1371/journal.pbio.3002198.
FreeFlux: A Python Package for Time-Efficient Isotopically Nonstationary Metabolic Flux Analysis.
Wu C, Guarnieri M, Xiong W
ACS Synth Biol. 2023; 12(9):2707-2714.
PMID: 37561998
PMC: 10510750.
DOI: 10.1021/acssynbio.3c00265.
Gene and protein expression and metabolic flux analysis reveals metabolic scaling in liver ex vivo and in vivo.
Akingbesote N, Leitner B, Jovin D, Desrouleaux R, Owusu D, Zhu W
Elife. 2023; 12.
PMID: 37219930
PMC: 10205083.
DOI: 10.7554/eLife.78335.
The effect of sodium thiosulfate on immune cell metabolism during porcine hemorrhage and resuscitation.
Wolfschmitt E, Hogg M, Vogt J, Zink F, Wachter U, Hezel F
Front Immunol. 2023; 14:1125594.
PMID: 36911662
PMC: 9996035.
DOI: 10.3389/fimmu.2023.1125594.
Unravelling metabolic cross-feeding in a yeast-bacteria community using C-based proteomics.
Gabrielli N, Maga-Nteve C, Kafkia E, Rettel M, Loeffler J, Kamrad S
Mol Syst Biol. 2023; 19(4):e11501.
PMID: 36779294
PMC: 10090948.
DOI: 10.15252/msb.202211501.
Exploring the expressiveness of abstract metabolic networks.
Garcia I, Chouaia B, Llabres M, Simeoni M
PLoS One. 2023; 18(2):e0281047.
PMID: 36758030
PMC: 9910719.
DOI: 10.1371/journal.pone.0281047.
One-shot C N-metabolic flux analysis for simultaneous quantification of carbon and nitrogen flux.
Borah Slater K, Beyss M, Xu Y, Barber J, Costa C, Newcombe J
Mol Syst Biol. 2023; 19(3):e11099.
PMID: 36705093
PMC: 9996240.
DOI: 10.15252/msb.202211099.
Probing Single-Cell Fermentation Fluxes and Exchange Networks via pH-Sensing Hybrid Nanofibers.
Onesto V, Forciniti S, Alemanno F, Narayanankutty K, Chandra A, Prasad S
ACS Nano. 2022; 17(4):3313-3323.
PMID: 36573897
PMC: 9979640.
DOI: 10.1021/acsnano.2c06114.
Isolated murine skeletal muscles utilize pyruvate over glucose for oxidation.
Khattri R, Puglise J, Ryan T, Walter G, Merritt M, Barton E
Metabolomics. 2022; 18(12):105.
PMID: 36480060
PMC: 9732067.
DOI: 10.1007/s11306-022-01948-x.
Monitoring and modelling the dynamics of the cellular glycolysis pathway: A review and future perspectives.
Patil N, Howe O, Cahill P, Byrne H
Mol Metab. 2022; 66:101635.
PMID: 36379354
PMC: 9703637.
DOI: 10.1016/j.molmet.2022.101635.