Platero A, Pueyo J, Bishop S, Magny E, Couso J
Cells. 2025; 13(24.
PMID: 39768181
PMC: 11674832.
DOI: 10.3390/cells13242090.
Olson D, Wheeler T
Bioinform Adv. 2024; 4(1):vbae149.
PMID: 39575229
PMC: 11580682.
DOI: 10.1093/bioadv/vbae149.
Liu P, Wang Z, Qi M, Hu H
Mol Biol Evol. 2024; 41(9).
PMID: 39271164
PMC: 11427683.
DOI: 10.1093/molbev/msae195.
Weibel C, Wheeler A, James J, Willis S, McShea H, Masel J
Elife. 2024; 12.
PMID: 39239703
PMC: 11379457.
DOI: 10.7554/eLife.87335.
Olson D, Wheeler T
bioRxiv. 2024; .
PMID: 38895435
PMC: 11185745.
DOI: 10.1101/2024.06.03.597269.
Rapid Targeted Assembly of the Proteome Reveals Evolutionary Variation of GC Content in Avian Lice.
Grant A, Johnson K, Stanley E, Baldwin-Brown J, Kolencik S, Allen J
Bioinform Biol Insights. 2024; 18:11779322241257991.
PMID: 38860163
PMC: 11163934.
DOI: 10.1177/11779322241257991.
The protein domains of vertebrate species in which selection is more effective have greater intrinsic structural disorder.
Weibel C, Wheeler A, James J, Willis S, McShea H, Masel J
bioRxiv. 2024; .
PMID: 38712167
PMC: 11071303.
DOI: 10.1101/2023.03.02.530449.
Emergence of enhancers at late DNA replicating regions.
Cornejo-Paramo P, Petrova V, Zhang X, Young R, Wong E
Nat Commun. 2024; 15(1):3451.
PMID: 38658544
PMC: 11043393.
DOI: 10.1038/s41467-024-47391-5.
Inference of genomic landscapes using ordered Hidden Markov Models with emission densities (oHMMed).
Vogl C, Karapetiants M, Yildirim B, Kjartansdottir H, Kosiol C, Bergman J
BMC Bioinformatics. 2024; 25(1):151.
PMID: 38627634
PMC: 11021005.
DOI: 10.1186/s12859-024-05751-4.
GC Content Across Insect Genomes: Phylogenetic Patterns, Causes and Consequences.
Kyriacou R, Mulhair P, Holland P
J Mol Evol. 2024; 92(2):138-152.
PMID: 38491221
PMC: 10978632.
DOI: 10.1007/s00239-024-10160-5.
Selection on synonymous sites: the unwanted transcript hypothesis.
Radrizzani S, Kudla G, Izsvak Z, Hurst L
Nat Rev Genet. 2024; 25(6):431-448.
PMID: 38297070
DOI: 10.1038/s41576-023-00686-7.
GC heterogeneity reveals sequence-structures evolution of angiosperm ITS2.
Liu Y, Liang N, Xian Q, Zhang W
BMC Plant Biol. 2023; 23(1):608.
PMID: 38036992
PMC: 10691020.
DOI: 10.1186/s12870-023-04634-9.
Identification genetic variations in some heat shock protein genes of Tali goat breed and study their structural and functional effects on relevant proteins.
Rezvannejad E, Mousavizadeh S
Vet Med Sci. 2023; 9(5):2247-2259.
PMID: 37530404
PMC: 10508551.
DOI: 10.1002/vms3.1231.
Compositional Structure of the Genome: A Review.
Bernaola-Galvan P, Carpena P, Gomez-Martin C, Oliver J
Biology (Basel). 2023; 12(6).
PMID: 37372134
PMC: 10295253.
DOI: 10.3390/biology12060849.
Structure-Based GC Investigation Sheds New Light on ITS2 Evolution in Species.
Xian Q, Wang S, Liu Y, Kan S, Zhang W
Int J Mol Sci. 2023; 24(9).
PMID: 37175423
PMC: 10178233.
DOI: 10.3390/ijms24097716.
Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants.
Tyszka A, Bretz E, Robertson H, Woodcock-Girard M, Ramanauskas K, Larson D
Front Plant Sci. 2023; 14:1125107.
PMID: 37063179
PMC: 10098128.
DOI: 10.3389/fpls.2023.1125107.
The revised reference genome of the leopard gecko (Eublepharis macularius) provides insight into the considerations of genome phasing and assembly.
Pinto B, Gamble T, Smith C, Keating S, Havird J, Chiari Y
J Hered. 2023; 114(5):513-520.
PMID: 36869788
PMC: 10445513.
DOI: 10.1093/jhered/esad016.
The revised reference genome of the leopard gecko ( ) provides insight into the considerations of genome phasing and assembly.
Pinto B, Gamble T, Smith C, Keating S, Havird J, Chiari Y
bioRxiv. 2023; .
PMID: 36712019
PMC: 9882329.
DOI: 10.1101/2023.01.20.523807.
Stop Codon Usage as a Window into Genome Evolution: Mutation, Selection, Biased Gene Conversion and the TAG Paradox.
Ho A, Hurst L
Genome Biol Evol. 2022; 14(8).
PMID: 35867377
PMC: 9348620.
DOI: 10.1093/gbe/evac115.
The Rattlesnake W Chromosome: A GC-Rich Retroelement Refugium with Retained Gene Function Across Ancient Evolutionary Strata.
Schield D, Perry B, Card D, Pasquesi G, Westfall A, Mackessy S
Genome Biol Evol. 2022; 14(9).
PMID: 35867356
PMC: 9447483.
DOI: 10.1093/gbe/evac116.