Efimov A
Methods Mol Biol. 2024; 2870:21-40.
PMID: 39543028
DOI: 10.1007/978-1-0716-4213-9_2.
Grigas A, Liu Z, Logan J, Shattuck M, OHern C
ArXiv. 2024; .
PMID: 38800654
PMC: 11118678.
Badonyi M, Marsh J
Elife. 2022; 11.
PMID: 35899946
PMC: 9365393.
DOI: 10.7554/eLife.79602.
Parray Z, Ahmad F, Chaudhary A, Rudayni H, Al-Zharani M, Hassan M
Front Mol Biosci. 2022; 9:849683.
PMID: 35693552
PMC: 9174945.
DOI: 10.3389/fmolb.2022.849683.
Rostovtseva T, Bezrukov S, Hoogerheide D
Int J Mol Sci. 2021; 22(14).
PMID: 34298976
PMC: 8306229.
DOI: 10.3390/ijms22147358.
Abundance Imparts Evolutionary Constraints of Similar Magnitude on the Buried, Surface, and Disordered Regions of Proteins.
Dubreuil B, Levy E
Front Mol Biosci. 2021; 8:626729.
PMID: 33996892
PMC: 8119896.
DOI: 10.3389/fmolb.2021.626729.
Mal-Prec: computational prediction of protein Malonylation sites via machine learning based feature integration : Malonylation site prediction.
Liu X, Wang L, Li J, Hu J, Zhang X
BMC Genomics. 2020; 21(1):812.
PMID: 33225896
PMC: 7682087.
DOI: 10.1186/s12864-020-07166-w.
Effect of a post-translational modification mimic on protein translocation through a nanopore.
Hoogerheide D, Gurnev P, Rostovtseva T, Bezrukov S
Nanoscale. 2020; 12(20):11070-11078.
PMID: 32400834
PMC: 7350168.
DOI: 10.1039/d0nr01577f.
The Amyloid as a Ribbon-Like Micelle in Contrast to Spherical Micelles Represented by Globular Proteins.
Banach M, Konieczny L, Roterman I
Molecules. 2019; 24(23).
PMID: 31816829
PMC: 6930452.
DOI: 10.3390/molecules24234395.
Amino acid ferrocene conjugates using sulfonamide linkages.
Chanawanno K, Blesener T, Schrage B, Nemykin V, Herrick R, Ziegler C
J Organomet Chem. 2019; 870:121-129.
PMID: 31105336
PMC: 6519478.
DOI: 10.1016/j.jorganchem.2018.06.018.
Theoretical analysis on thermodynamic stability of chignolin.
Sumi T, Koga K
Sci Rep. 2019; 9(1):5186.
PMID: 30914684
PMC: 6435801.
DOI: 10.1038/s41598-019-41518-1.
Calculation of accurate interatomic contact surface areas for the quantitative analysis of non-bonded molecular interactions.
Ribeiro J, Rios-Vera C, Melo F, Schuller A
Bioinformatics. 2019; 35(18):3499-3501.
PMID: 30698657
PMC: 6748739.
DOI: 10.1093/bioinformatics/btz062.
An account of solvent accessibility in protein-RNA recognition.
Mukherjee S, Bahadur R
Sci Rep. 2018; 8(1):10546.
PMID: 30002431
PMC: 6043566.
DOI: 10.1038/s41598-018-28373-2.
Peptide Level Turnover Measurements Enable the Study of Proteoform Dynamics.
Zecha J, Meng C, Zolg D, Samaras P, Wilhelm M, Kuster B
Mol Cell Proteomics. 2018; 17(5):974-992.
PMID: 29414762
PMC: 5930408.
DOI: 10.1074/mcp.RA118.000583.
MLACP: machine-learning-based prediction of anticancer peptides.
Manavalan B, Basith S, Shin T, Choi S, Kim M, Lee G
Oncotarget. 2017; 8(44):77121-77136.
PMID: 29100375
PMC: 5652333.
DOI: 10.18632/oncotarget.20365.
Collective repacking reveals that the structures of protein cores are uniquely specified by steric repulsive interactions.
Gaines J, Virrueta A, Buch D, Fleishman S, OHern C, Regan L
Protein Eng Des Sel. 2017; 30(5):387-394.
PMID: 28201818
PMC: 7263838.
DOI: 10.1093/protein/gzx011.
The contribution of intrinsically disordered regions to protein function, cellular complexity, and human disease.
Babu M
Biochem Soc Trans. 2016; 44(5):1185-1200.
PMID: 27911701
PMC: 5095923.
DOI: 10.1042/BST20160172.
The Hevea brasiliensis XIP aquaporin subfamily: genomic, structural and functional characterizations with relevance to intensive latex harvesting.
Lopez D, Amira M, Brown D, Muries B, Brunel-Michac N, Bourgerie S
Plant Mol Biol. 2016; 91(4-5):375-96.
PMID: 27068521
DOI: 10.1007/s11103-016-0462-y.
Reconciling the understanding of 'hydrophobicity' with physics-based models of proteins.
Harris R, Pettitt B
J Phys Condens Matter. 2016; 28(8):083003.
PMID: 26836518
PMC: 5370576.
DOI: 10.1088/0953-8984/28/8/083003.
AcconPred: Predicting Solvent Accessibility and Contact Number Simultaneously by a Multitask Learning Framework under the Conditional Neural Fields Model.
Ma J, Wang S
Biomed Res Int. 2015; 2015:678764.
PMID: 26339631
PMC: 4538422.
DOI: 10.1155/2015/678764.