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The European Large Subunit Ribosomal RNA Database

Overview
Specialty Biochemistry
Date 2000 Jan 11
PMID 11125083
Citations 46
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Abstract

The European Large Subunit Ribosomal RNA Database compiles all complete or nearly complete large subunit ribosomal RNA sequences available from public sequence databases. These are provided in aligned format and the secondary structure, as derived by comparative sequence analysis, is included. Additional information about the sequences such as literature references and taxonomic information is also included. The database is available from our WWW server at http://rrna.uia.ac.be/lsu/.

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References
1.
Wheeler D, Chappey C, Lash A, Leipe D, Madden T, Schuler G . Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 1999; 28(1):10-4. PMC: 102437. DOI: 10.1093/nar/28.1.10. View

2.
Baker W, van Den Broek A, Camon E, Hingamp P, Sterk P, Stoesser G . The EMBL nucleotide sequence database. Nucleic Acids Res. 1999; 28(1):19-23. PMC: 102461. DOI: 10.1093/nar/28.1.19. View

3.
Ban N, Nissen P, Hansen J, Moore P, Steitz T . The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science. 2000; 289(5481):905-20. DOI: 10.1126/science.289.5481.905. View

4.
De Rijk P, De Wachter R . RnaViz, a program for the visualisation of RNA secondary structure. Nucleic Acids Res. 1998; 25(22):4679-84. PMC: 147081. DOI: 10.1093/nar/25.22.4679. View

5.
De Rijk P, De Wachter R . DCSE, an interactive tool for sequence alignment and secondary structure research. Comput Appl Biosci. 1993; 9(6):735-40. DOI: 10.1093/bioinformatics/9.6.735. View