The Structure of Aspartyl Dipeptidase Reveals a Unique Fold with a Ser-His-Glu Catalytic Triad
Overview
Authors
Affiliations
The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E, was solved crystallographically and refined to 1.2-A resolution. The structure of this 25-kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organization of the catalytic triad differ from those of the known serine proteases. This enzyme is a member of a family of serine hydrolases and appears to represent a new example of convergent evolution of peptidase activity.
The Nϵ-Rule for Serine, but Not Cysteine Catalytic Triads.
Czapinska H, Bochtler M Angew Chem Int Ed Engl. 2022; 61(42):e202206945.
PMID: 35983934 PMC: 9825947. DOI: 10.1002/anie.202206945.
Medvedev K, Kinch L, Schaeffer R, Pei J, Grishin N J Mol Biol. 2021; 433(4):166788.
PMID: 33387532 PMC: 7870570. DOI: 10.1016/j.jmb.2020.166788.
Structural analysis of a phospholipase reveals an unusual Ser-His-chloride catalytic triad.
Wan Y, Liu C, Ma Q J Biol Chem. 2019; 294(30):11391-11401.
PMID: 31073025 PMC: 6663882. DOI: 10.1074/jbc.RA119.008280.
Koc I, Caetano-Anolles G PLoS One. 2017; 12(5):e0176129.
PMID: 28467492 PMC: 5414959. DOI: 10.1371/journal.pone.0176129.
Franta Z, Vogel H, Lehmann R, Rupp O, Goesmann A, Vilcinskas A Biomed Res Int. 2016; 2016:8285428.
PMID: 27119084 PMC: 4826915. DOI: 10.1155/2016/8285428.