Liu W, Chen M, Liu Y, Li X, Li H, Wang J
Front Vet Sci. 2025; 12:1540613.
PMID: 40027357
PMC: 11868070.
DOI: 10.3389/fvets.2025.1540613.
Marceca G, Romano G, Acunzo M, Nigita G
Methods Mol Biol. 2024; 2883:455-495.
PMID: 39702721
DOI: 10.1007/978-1-0716-4290-0_20.
Zhang Y, Liu H, Niu M, Wang Y, Xu R, Guo Y
Cell Death Discov. 2024; 10(1):235.
PMID: 38750059
PMC: 11096177.
DOI: 10.1038/s41420-024-02002-6.
Ren L, Zhang H, Luo M, Gao X, Cui J, Zhang X
Epigenetics Chromatin. 2022; 15(1):19.
PMID: 35597966
PMC: 9123727.
DOI: 10.1186/s13072-022-00455-6.
Ye M, Xie L, Zhang J, Liu B, Liu X, He J
Oncol Lett. 2020; 20(4):1.
PMID: 32774475
PMC: 7405546.
DOI: 10.3892/ol.2020.11862.
Potential Implications of Long Noncoding RNAs in Autoimmune Diseases.
Hur K, Kim S, Kim J
Immune Netw. 2019; 19(1):e4.
PMID: 30838159
PMC: 6399094.
DOI: 10.4110/in.2019.19.e4.
Long non-coding RNAs in hematopoietic regulation.
Li W, Ren Y, Si Y, Wang F, Yu J
Cell Regen. 2019; 7(2):27-32.
PMID: 30671227
PMC: 6326246.
DOI: 10.1016/j.cr.2018.08.001.
Identification of H4K20me3- and H3K4me3-associated RNAs using CARIP-Seq expands the transcriptional and epigenetic networks of embryonic stem cells.
Kurup J, Kidder B
J Biol Chem. 2018; 293(39):15120-15135.
PMID: 30115682
PMC: 6166716.
DOI: 10.1074/jbc.RA118.004974.
CARIP-Seq and ChIP-Seq: Methods to Identify Chromatin-Associated RNAs and Protein-DNA Interactions in Embryonic Stem Cells.
Kidder B
J Vis Exp. 2018; (135).
PMID: 29889205
PMC: 6101426.
DOI: 10.3791/57481.
LncRNA Structural Characteristics in Epigenetic Regulation.
Wang C, Wang L, Ding Y, Lu X, Zhang G, Yang J
Int J Mol Sci. 2018; 18(12).
PMID: 29292750
PMC: 5751261.
DOI: 10.3390/ijms18122659.
RPI-Bind: a structure-based method for accurate identification of RNA-protein binding sites.
Luo J, Liu L, Venkateswaran S, Song Q, Zhou X
Sci Rep. 2017; 7(1):614.
PMID: 28377624
PMC: 5429624.
DOI: 10.1038/s41598-017-00795-4.
Retrotransposon-associated long non-coding RNAs in mice and men.
Ganesh S, Svoboda P
Pflugers Arch. 2016; 468(6):1049-60.
PMID: 27044413
DOI: 10.1007/s00424-016-1818-5.
Widespread RNA binding by chromatin-associated proteins.
Hendrickson D, Kelley D, Tenen D, Bernstein B, Rinn J
Genome Biol. 2016; 17:28.
PMID: 26883116
PMC: 4756407.
DOI: 10.1186/s13059-016-0878-3.
The Functional Analysis of Histone Acetyltransferase MOF in Tumorigenesis.
Su J, Wang F, Cai Y, Jin J
Int J Mol Sci. 2016; 17(1).
PMID: 26784169
PMC: 4730341.
DOI: 10.3390/ijms17010099.
A genome-wide investigation of expression characteristics of natural antisense transcripts in liver and muscle samples of pigs.
Chen C, Wei R, Qiao R, Ren J, Yang H, Liu C
PLoS One. 2013; 7(12):e52433.
PMID: 23285040
PMC: 3527515.
DOI: 10.1371/journal.pone.0052433.
Avian sex chromosomes: dosage compensation matters.
McQueen H, Clinton M
Chromosome Res. 2009; 17(5):687-97.
PMID: 19802708
DOI: 10.1007/s10577-009-9056-8.
Conserved introns reveal novel transcripts in Drosophila melanogaster.
Hiller M, Findeiss S, Lein S, Marz M, Nickel C, Rose D
Genome Res. 2009; 19(7):1289-300.
PMID: 19458021
PMC: 2704441.
DOI: 10.1101/gr.090050.108.
Telomeric RNAs mark sex chromosomes in stem cells.
Zhang L, Ogawa Y, Ahn J, Namekawa S, Silva S, Lee J
Genetics. 2009; 182(3):685-98.
PMID: 19380904
PMC: 2710151.
DOI: 10.1534/genetics.109.103093.
A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation.
Lian Z, Karpikov A, Lian J, Mahajan M, Hartman S, Gerstein M
Genome Res. 2008; 18(8):1224-37.
PMID: 18487515
PMC: 2493437.
DOI: 10.1101/gr.075804.107.
Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome.
Wu J, Du J, Rozowsky J, Zhang Z, Urban A, Euskirchen G
Genome Biol. 2008; 9(1):R3.
PMID: 18173853
PMC: 2395237.
DOI: 10.1186/gb-2008-9-1-r3.