Tsuda K
Methods Mol Biol. 2024; 2869:157-168.
PMID: 39499476
DOI: 10.1007/978-1-0716-4204-7_16.
Bruner W, Grant S
Front Genet. 2024; 15:1375481.
PMID: 39421299
PMC: 11484060.
DOI: 10.3389/fgene.2024.1375481.
Panara V, Yu H, Peng D, Staxang K, Hodik M, Filipek-Gorniok B
Development. 2024; 151(9).
PMID: 38722096
PMC: 11128278.
DOI: 10.1242/dev.202525.
Gonzalez P, Hauck Q, Baxevanis A
Genome Biol Evol. 2024; 16(4).
PMID: 38502060
PMC: 10988421.
DOI: 10.1093/gbe/evae052.
Kazenwadel J, Venugopal P, Oszmiana A, Toubia J, Arriola-Martinez L, Panara V
Nature. 2023; 614(7947):343-348.
PMID: 36697821
DOI: 10.1038/s41586-022-05650-9.
Comparative mitogenome analysis reveals mitochondrial genome characteristics in eight strains of .
Bai Y, Gao X, Wang H, Ye L, Zhang X, Huang W
PeerJ. 2022; 10:e14067.
PMID: 36193428
PMC: 9526403.
DOI: 10.7717/peerj.14067.
Open chromatin in grapevine marks candidate CREs and with other chromatin features correlates with gene expression.
Schwope R, Magris G, Miculan M, Paparelli E, Celii M, Tocci A
Plant J. 2021; 107(6):1631-1647.
PMID: 34219317
PMC: 8518642.
DOI: 10.1111/tpj.15404.
Temporal evolution of cellular heterogeneity during the progression to advanced AR-negative prostate cancer.
Brady N, Bagadion A, Singh R, Conteduca V, Van Emmenis L, Arceci E
Nat Commun. 2021; 12(1):3372.
PMID: 34099734
PMC: 8185096.
DOI: 10.1038/s41467-021-23780-y.
Plasticity of Naturally Occurring Regulatory T Cells in Allergic Airway Disease Is Modulated by the Transcriptional Activity of .
Macbeth M, Joetham A, Gelfand E, Schedel M
Int J Mol Sci. 2021; 22(9).
PMID: 33925531
PMC: 8123826.
DOI: 10.3390/ijms22094582.
Posttranslational regulation of multiple clock-related transcription factors triggers cold-inducible gene expression in .
Kidokoro S, Hayashi K, Haraguchi H, Ishikawa T, Soma F, Konoura I
Proc Natl Acad Sci U S A. 2021; 118(10).
PMID: 33649234
PMC: 7958436.
DOI: 10.1073/pnas.2021048118.
The Transcription Factor Is Essential for a Successful Mesenchymal to Epithelial Transition.
Sengez B, Aygun I, Shehwana H, Toyran N, Tercan Avci S, Konu O
Cells. 2019; 8(8).
PMID: 31404945
PMC: 6721682.
DOI: 10.3390/cells8080858.
An Exploration Into Improving DNA Motif Inference by Looking for Highly Conserved Core Regions.
Thompson J, Congdon C
IEEE Symp Comput Intell Bioinforma Comput Biol Proc. 2019; 2013:60-67.
PMID: 31008453
PMC: 6474685.
DOI: 10.1109/CIBCB.2013.6595389.
CNEFinder: finding conserved non-coding elements in genomes.
Ayad L, Pissis S, Polychronopoulos D
Bioinformatics. 2018; 34(17):i743-i747.
PMID: 30423090
PMC: 6129273.
DOI: 10.1093/bioinformatics/bty601.
The Genomic Basis of Tumor Regression in Tasmanian Devils (Sarcophilus harrisii).
Margres M, Ruiz-Aravena M, Hamede R, Jones M, Lawrance M, Hendricks S
Genome Biol Evol. 2018; 10(11):3012-3025.
PMID: 30321343
PMC: 6251476.
DOI: 10.1093/gbe/evy229.
Spatial regulation of expanded transcription in the Drosophila wing imaginal disc.
Wang L, Baker N
PLoS One. 2018; 13(7):e0201317.
PMID: 30063727
PMC: 6067730.
DOI: 10.1371/journal.pone.0201317.
Stat3 and CCAAT enhancer-binding protein β (C/ebpβ) activate Fanconi C gene transcription during emergency granulopoiesis.
Shah C, Broglie L, Hu L, Bei L, Huang W, Dressler D
J Biol Chem. 2018; 293(11):3937-3948.
PMID: 29382715
PMC: 5857980.
DOI: 10.1074/jbc.RA117.000528.
Purifying selection acts on coding and non-coding sequences of paralogous genes in Arabidopsis thaliana.
Hoffmann R, Palmgren M
BMC Genomics. 2016; 17:456.
PMID: 27296049
PMC: 4906602.
DOI: 10.1186/s12864-016-2803-2.
Parallel Evolution of Polydactyly Traits in Chinese and European Chickens.
Zhang Z, Nie C, Jia Y, Jiang R, Xia H, Lv X
PLoS One. 2016; 11(2):e0149010.
PMID: 26859147
PMC: 4747547.
DOI: 10.1371/journal.pone.0149010.
CEGA--a catalog of conserved elements from genomic alignments.
Dousse A, Junier T, Zdobnov E
Nucleic Acids Res. 2015; 44(D1):D96-100.
PMID: 26527719
PMC: 4702837.
DOI: 10.1093/nar/gkv1163.
Discovery of functional non-coding conserved regions in the α-synuclein gene locus.
Sterling L, Walter M, Ting D, Schule B
F1000Res. 2015; 3:259.
PMID: 25566351
PMC: 4275022.
DOI: 10.12688/f1000research.3281.2.