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Active Conservation of Noncoding Sequences Revealed by Three-way Species Comparisons

Overview
Journal Genome Res
Specialty Genetics
Date 2000 Sep 14
PMID 10984448
Citations 122
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Abstract

Human and mouse genomic sequence comparisons are being increasingly used to search for evolutionarily conserved gene regulatory elements. Large-scale human-mouse DNA comparison studies have discovered numerous conserved noncoding sequences of which only a fraction has been functionally investigated A question therefore remains as to whether most of these noncoding sequences are conserved because of functional constraints or are the result of a lack of divergence time.

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References
1.
Gottgens B, Barton L, GILBERT J, Bench A, Sanchez M, Bahn S . Analysis of vertebrate SCL loci identifies conserved enhancers. Nat Biotechnol. 2000; 18(2):181-6. DOI: 10.1038/72635. View

2.
Loots G, Locksley R, Blankespoor C, Wang Z, Miller W, Rubin E . Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science. 2001; 288(5463):136-40. DOI: 10.1126/science.288.5463.136. View

3.
Batzoglou S, Pachter L, Mesirov J, Berger B, Lander E . Human and mouse gene structure: comparative analysis and application to exon prediction. Genome Res. 2000; 10(7):950-8. PMC: 310911. DOI: 10.1101/gr.10.7.950. View

4.
Ansari-Lari M, Oeltjen J, Schwartz S, Zhang Z, Muzny D, Lu J . Comparative sequence analysis of a gene-rich cluster at human chromosome 12p13 and its syntenic region in mouse chromosome 6. Genome Res. 1998; 8(1):29-40. View

5.
Koop B, Hood L . Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA. Nat Genet. 1994; 7(1):48-53. DOI: 10.1038/ng0594-48. View