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Emerging Features of MRNA Decay in Bacteria

Overview
Journal RNA
Specialty Molecular Biology
Date 2000 Aug 16
PMID 10943888
Citations 47
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Abstract

The problem of mRNA decay in E. coli has recently seen exciting progress, with the discoveries that key degradation enzymes are associated together in a high molecular weight degradosome and that polyadenylation promotes decay. Recent advances make it clear that mRNA decay in bacteria is far more interesting enzymatically than might have been predicted. In-depth study of specific mRNAs has revealed multiple pathways for degradation. Which pathway a given mRNA follows appears to depend in large part on the location of the initiating endonucleolytic cleavage within the mRNA. During the steps of mRNA decay, stable RNA structures pose formidable barriers to the 3' --> 5' exonucleases. However, polyadenylation is now emerging as a process that plays an important role in maintaining the momentum of exonucleolytic degradation by adding single-stranded extensions to the 3' ends of mRNAs and their decay intermediates, thereby facilitating further exonuclease digestion.

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References
1.
August J, ORTIZ P, Hurwitz J . Ribonucleic acid-dependent ribonucleotide incorporation. I. Purification and properties of the enzyme. J Biol Chem. 1962; 237:3786-93. View

2.
SPAHR P . PURIFICATION AND PROPERTIES OF RIBONUCLEASE II FROM ESCHERICHIA COLI. J Biol Chem. 1964; 239:3716-26. View

3.
Binnie U, Wong K, McAteer S, Masters M . Absence of RNASE III alters the pathway by which RNAI, the antisense inhibitor of ColE1 replication, decays. Microbiology (Reading). 1999; 145 ( Pt 11):3089-3100. DOI: 10.1099/00221287-145-11-3089. View

4.
Mohanty B, Kushner S . Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism. Mol Microbiol. 1999; 34(5):1094-108. DOI: 10.1046/j.1365-2958.1999.01673.x. View

5.
Mohanty B, Kushner S . Residual polyadenylation in poly(A) polymerase I (pcnB ) mutants of Escherichia coli does not result from the activity encoded by the f310 gene. Mol Microbiol. 1999; 34(5):1109-19. DOI: 10.1046/j.1365-2958.1999.01674.x. View