» Articles » PMID: 10793725

Correlation Between Three-dimensional Structure and Chemical Reactivity of Transfer RNA

Overview
Specialty Biochemistry
Date 1974 Jul 1
PMID 10793725
Citations 18
Authors
Affiliations
Soon will be listed here.
Abstract

The bases of yeast tRNA(Phe) which react with carbodiimide and methoxyamine have been determined and this information has been combined with chemical modification studies of other workers to produce a composite picture of base accessibility in this tRNA. The results are compared with the three-dimensional structure which we have recently determined. The bases which react chemically lie in exposed positions in the three-dimensional model and those which do not are either in the double helical stem regions or else are involved in maintaining the tertiary structure through pairing or stacking interactions.

Citing Articles

Structural Insights into tRNA Dynamics on the Ribosome.

Agirrezabala X, Valle M Int J Mol Sci. 2015; 16(5):9866-95.

PMID: 25941930 PMC: 4463622. DOI: 10.3390/ijms16059866.


Examinations of tRNA Range of Motion Using Simulations of Cryo-EM Microscopy and X-Ray Data.

Caulfield T, Devkota B, Rollins G J Biophys. 2011; 2011:219515.

PMID: 21716650 PMC: 3116532. DOI: 10.1155/2011/219515.


Tertiary network in mammalian mitochondrial tRNAAsp revealed by solution probing and phylogeny.

Messmer M, Putz J, Suzuki T, Suzuki T, Sauter C, Sissler M Nucleic Acids Res. 2009; 37(20):6881-95.

PMID: 19767615 PMC: 2777451. DOI: 10.1093/nar/gkp697.


The crystal structure of tRNA.

Clark B J Biosci. 2007; 31(4):453-7.

PMID: 17206065 DOI: 10.1007/BF02705184.


A model for the tertiary structure of mammalian mitochondrial transfer RNAs lacking the entire 'dihydrouridine' loop and stem.

de Bruijn M, Klug A EMBO J. 1983; 2(8):1309-21.

PMID: 10872325 PMC: 555277. DOI: 10.1002/j.1460-2075.1983.tb01586.x.


References
1.
Cramer F, Doepner H, Haar F V, Schlimme E, Seidel H . On the conformation of transfer RNA. Proc Natl Acad Sci U S A. 1968; 61(4):1384-91. PMC: 225267. DOI: 10.1073/pnas.61.4.1384. View

2.
Zachau H . On the specificity of the reduction of transfer ribonucleic acids with sodium borohydride. Eur J Biochem. 1969; 10(3):549-56. DOI: 10.1111/j.1432-1033.1969.tb00723.x. View

3.
Levitt M . Detailed molecular model for transfer ribonucleic acid. Nature. 1969; 224(5221):759-63. DOI: 10.1038/224759a0. View

4.
Zachau H . Involvement of 1-methyladenosine and 7-methylguanosine in the three-dimensional structure of (yeast)tRNAPhe. Eur J Biochem. 1971; 18(2):292-8. DOI: 10.1111/j.1432-1033.1971.tb01243.x. View

5.
Cashmore A, Brown D, Smith J . Selective reaction of methoxyamine with cytosine bases in tyrosine transfer ribonucleic acid. J Mol Biol. 1971; 59(2):359-73. DOI: 10.1016/0022-2836(71)90056-8. View