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ProDom and ProDom-CG: Tools for Protein Domain Analysis and Whole Genome Comparisons

Overview
Journal Nucleic Acids Res
Publisher Oxford University Press
Specialty Biochemistry
Date 1999 Dec 11
PMID 10592243
Citations 107
Authors
F Corpet
F Servant
J Gouzy
D Kahn
Affiliations
Soon will be listed here.
Abstract

ProDom contains all protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases (http://www. toulouse.inra.fr/prodom.html ). ProDom-CG results from a similar domain analysis as applied to completed genomes (http://www.toulouse. inra.fr/prodomCG.html ). Recent improvements to the ProDom database and its server include: scaling up to include sequences from TrEMBL, addition of Pfam-A entries to the set of expert validated families, assignment of stable accession numbers, consistency indicators for domain families, domain arrangements of sub-families and links to Pfam-A.

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