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Kinetic Stability As a Mechanism for Protease Longevity

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Specialty Science
Date 1999 Sep 29
PMID 10500115
Citations 28
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Abstract

The folding of the extracellular serine protease, alpha-lytic protease (alphaLP; EC 3.4.21.12) reveals a novel mechanism for stability that appears to lead to a longer functional lifetime for the protease. For alphaLP, stability is based not on thermodynamics, but on kinetics. Whereas this has required the coevolution of a pro region to facilitate folding, the result has been the optimization of native-state properties independent of their consequences on thermodynamic stability. Structural and mutational data lead to a model for catalysis of folding in which the pro region binds to a conserved beta-hairpin in the alphaLP C-terminal domain, stabilizing the folding transition state and the native state. The pro region is then proteolytically degraded, leaving the active alphaLP trapped in a metastable conformation. This metastability appears to be a consequence of pressure to evolve properties of the native state, including a large, highly cooperative barrier to unfolding, and extreme rigidity, that reduce susceptibility to proteolytic degradation. In a test of survival under highly proteolytic conditions, homologous mammalian proteases that have not evolved kinetic stability are much more rapidly degraded than alphaLP. Kinetic stability as a means to longevity is likely to be a mechanism conserved among the majority of extracellular bacterial pro-proteases and may emerge as a general strategy for intracellular eukaryotic proteases subject to harsh conditions as well.

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References
1.
Fujinaga M, Delbaere L, Brayer G, James M . Refined structure of alpha-lytic protease at 1.7 A resolution. Analysis of hydrogen bonding and solvent structure. J Mol Biol. 1985; 184(3):479-502. DOI: 10.1016/0022-2836(85)90296-7. View

2.
Anderson D, Peters R, Wilk B, Agard D . alpha-lytic protease precursor: characterization of a structured folding intermediate. Biochemistry. 1999; 38(15):4728-35. DOI: 10.1021/bi982165e. View

3.
Silen J, Frank D, Fujishige A, Bone R, Agard D . Analysis of prepro-alpha-lytic protease expression in Escherichia coli reveals that the pro region is required for activity. J Bacteriol. 1989; 171(3):1320-5. PMC: 209748. DOI: 10.1128/jb.171.3.1320-1325.1989. View

4.
Silen J, McGrath C, Smith K, Agard D . Molecular analysis of the gene encoding alpha-lytic protease: evidence for a preproenzyme. Gene. 1988; 69(2):237-44. DOI: 10.1016/0378-1119(88)90434-9. View

5.
Silen J, Agard D . The alpha-lytic protease pro-region does not require a physical linkage to activate the protease domain in vivo. Nature. 1989; 341(6241):462-4. DOI: 10.1038/341462a0. View