Pei G, Lyons H, Li P, Sabari B
Nat Rev Mol Cell Biol. 2024; 26(3):213-236.
PMID: 39516712
DOI: 10.1038/s41580-024-00789-x.
Linhartova K, Falginella F, Matl M, Sebesta M, Vacha R, Stefl R
Nat Commun. 2024; 15(1):9163.
PMID: 39448580
PMC: 11502803.
DOI: 10.1038/s41467-024-53305-2.
Wang W, Ye Y, Gao L
Brief Bioinform. 2024; 25(4).
PMID: 39003726
PMC: 11246602.
DOI: 10.1093/bib/bbae341.
Nickerson J, Momen-Heravi F
Nucleus. 2024; 15(1):2350180.
PMID: 38773934
PMC: 11123517.
DOI: 10.1080/19491034.2024.2350180.
Tian M, Wang Z, Su Z, Shibata E, Shibata Y, Dutta A
Elife. 2024; 12.
PMID: 38567819
PMC: 10990492.
DOI: 10.7554/eLife.89548.
Chromatin accessibility profiling methods.
Minnoye L, Marinov G, Krausgruber T, Pan L, Marand A, Secchia S
Nat Rev Methods Primers. 2024; 1.
PMID: 38410680
PMC: 10895463.
DOI: 10.1038/s43586-020-00008-9.
Transcriptional condensates: a blessing or a curse for gene regulation?.
Stortz M, Presman D, Levi V
Commun Biol. 2024; 7(1):187.
PMID: 38365945
PMC: 10873363.
DOI: 10.1038/s42003-024-05892-5.
Bacterial nucleoid is a riddle wrapped in a mystery inside an enigma.
Kuzminov A
J Bacteriol. 2024; 206(3):e0021123.
PMID: 38358278
PMC: 10994824.
DOI: 10.1128/jb.00211-23.
Single-molecule visualization of twin-supercoiled domains generated during transcription.
Janissen R, Barth R, Polinder M, van der Torre J, Dekker C
Nucleic Acids Res. 2023; 52(4):1677-1687.
PMID: 38084930
PMC: 10899792.
DOI: 10.1093/nar/gkad1181.
A novel SATB1 protein isoform with different biophysical properties.
Zelenka T, Papamatheakis D, Tzerpos P, Panagopoulos G, Tsolis K, Papadakis V
Front Cell Dev Biol. 2023; 11:1242481.
PMID: 37635874
PMC: 10457122.
DOI: 10.3389/fcell.2023.1242481.
RNA polymerase redistribution supports growth in E. coli strains with a minimal number of rRNA operons.
Fan J, El Sayyed H, Pambos O, Stracy M, Kyropoulos J, Kapanidis A
Nucleic Acids Res. 2023; 51(15):8085-8101.
PMID: 37351576
PMC: 10450203.
DOI: 10.1093/nar/gkad511.
Transcriptional condensates and phase separation: condensing information across scales and mechanisms.
Demmerle J, Hao S, Cai D
Nucleus. 2023; 14(1):2213551.
PMID: 37218279
PMC: 10208215.
DOI: 10.1080/19491034.2023.2213551.
Nuclear genome organization in fungi: from gene folding to Rabl chromosomes.
Torres D, Reckard A, Klocko A, Seidl M
FEMS Microbiol Rev. 2023; 47(3).
PMID: 37197899
PMC: 10246852.
DOI: 10.1093/femsre/fuad021.
The anatomy of transcriptionally active chromatin loops in Drosophila primary spermatocytes using super-resolution microscopy.
Ball M, Koestler S, Muresan L, Abdul Rehman S, OHolleran K, White R
PLoS Genet. 2023; 19(3):e1010654.
PMID: 36867662
PMC: 10016678.
DOI: 10.1371/journal.pgen.1010654.
Targeting phase separation on enhancers induced by transcription factor complex formations as a new strategy for treating drug-resistant cancers.
Takayama K, Inoue S
Front Oncol. 2022; 12:1024600.
PMID: 36263200
PMC: 9574090.
DOI: 10.3389/fonc.2022.1024600.
Deciphering multi-way interactions in the human genome.
Dotson G, Chen C, Lindsly S, Cicalo A, Dilworth S, Ryan C
Nat Commun. 2022; 13(1):5498.
PMID: 36127324
PMC: 9489732.
DOI: 10.1038/s41467-022-32980-z.
Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells.
Iida S, Shinkai S, Itoh Y, Tamura S, Kanemaki M, Onami S
Sci Adv. 2022; 8(22):eabn5626.
PMID: 35658044
PMC: 9166292.
DOI: 10.1126/sciadv.abn5626.
Spatial organization of transcribed eukaryotic genes.
Leidescher S, Ribisel J, Ullrich S, Feodorova Y, Hildebrand E, Galitsyna A
Nat Cell Biol. 2022; 24(3):327-339.
PMID: 35177821
PMC: 9380065.
DOI: 10.1038/s41556-022-00847-6.
Comparison of genome architecture at two stages of male germline cell differentiation in Drosophila.
Ilyin A, Kononkova A, Golova A, Shloma V, Olenkina O, Nenasheva V
Nucleic Acids Res. 2022; 50(6):3203-3225.
PMID: 35166842
PMC: 8989536.
DOI: 10.1093/nar/gkac109.
Super resolution microscopy reveals how elongating RNA polymerase II and nascent RNA interact with nucleosome clutches.
Castells-Garcia A, Ed-Daoui I, Gonzalez-Almela E, Vicario C, Ottestrom J, Lakadamyali M
Nucleic Acids Res. 2021; 50(1):175-190.
PMID: 34929735
PMC: 8754629.
DOI: 10.1093/nar/gkab1215.